Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 3.3 3.5e+03 -1.6 0.0 29 34 3 8 3 10 0.86

2 3 7.8e-12 8.2e-09 35.6 0.1 1 39 9 47 9 52 0.94

3 3 5.8 6.1e+03 -2.4 0.0 17 23 82 88 80 88 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	3.3	3.5e+03	-1.6	0.0	29	34	3	8	3	10	0.86
2	3	7.8e-12	8.2e-09	35.6	0.1	1	39	9	47	9	52	0.94
3	3	5.8	6.1e+03	-2.4	0.0	17	23	82	88	80	88	0.85

Coding Sequence: ATGCCTCCCAAACGGACATTGTGGTCAGAAGACGACCTGATCTCAGCTGTTCGAGCAGTACAAAGAGGAGCTATGAGTACGTATACGGCTGCAGAAAGATATAAAGTTCCTAGAAGAACAATCAGAAATCATCTGCAGTCTGGCAGTTTAAAGAAAACTTTGGGACGTAAACCTATATTGAATACTGAAGAGGAAGCTCAACTTGTGCAAAGGTTTAAAGCGTTCATGAAAAGACACCCTGAAGTATCGGTCAGAAAAGCTCAATTTATGAACCCAGCAAGAGCCCAAAAACTTAATAAATTTATTGTTGACGACCACTTCCAAAAATTGAAAATATGTATGATAAATTCGAATTATATGATCATCCTGAACGAATATATAACATGGATGAGAAAGGTTGCCGTCTCAGTATCCACCACCAGAAAAAGTGTTTTGGGCAAAAAAGGGGCTAAAAGGGTTCATTTGCAGTCTTCCGAACATGCAGAAAGCGTTACGATTGCAGGATGTGTTAATGCTCTCGGTACTGCAATACCACCTATGGTCATATTTAAGGGCAAACGATTAAAGCCAGAATTGTACGACAATTTGCCACCCGGATCTTTGGTTGAAAAGTCAGCAAAGGGGTACATGACAAATGAACTTTTCAAATCATTTTTAAGACATTTGTCCAAATACAAAAGCGAGGGACTATGGGAAACCGTCAATCCCCCCCTTATATTTTAA
Protein Sequence: MPPKRTLWSEDDLISAVRAVQRGAMSTYTAAERYKVPRRTIRNHLQSGSLKKTLGRKPILNTEEEAQLVQRFKAFMKRHPEVSVRKAQFMNPARAQKLNKFIVDDHFQKLKICMINSNYMIILNEYITWMRKVAVSVSTTRKSVLGKKGAKRVHLQSSEHAESVTIAGCVNALGTAIPPMVIFKGKRLKPELYDNLPPGSLVEKSAKGYMTNELFKSFLRHLSKYKSEGLWETVNPPLIF

Sequence clustering based on sequence similarity using MMseqs2