Mvio001912.1
Basic Information
- Insect
- Megathymus violae
- Gene Symbol
- -
- Assembly
- GCA_003671415.1
- Location
- PDGT01000072.1:1587557-1590467[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.014 15 6.0 0.0 31 45 60 75 59 75 0.92 2 2 2.2e-19 2.4e-16 59.8 0.0 1 44 82 126 82 126 0.96
Sequence Information
- Coding Sequence
- ATGGTAACGGTGAGAAATGACTCGCGAGTTGCTACAGTTGTACCAGATTTTGTGCTGCCGCAAAGTTCGGTCGCGGATAGACCGGCGCGTGAAAATAACGAGACGTCGCGATGGCAGTGCGGCGTGTGGGAAGAATTTGGTACCACTGTGACATTGTTGGGTCGTTGTCGGTGCACAGGCACGCTGTACGGACGGTGCAAGCGAGAGGGCATCGAGCTGTCCCGCTCCAACCCGACGCCGTGGTCCGAGGACGCCATGGGGGAAGCGCTCGAAGCCGTCAGGGTGGGCCAGATGTCTATCAACCAGGCGGCGATCCACTACAACCTGCCGTACTCCTCCTTGTATGGCCGCTTCAAGCGCTGCAAGTACCAACTACAGGGTGTTCCCCCGCACCTGCCGCAGGAGATATCCGCGGAGGAGCCCCCGGGGCACTTCCATTGCTACCAGCCAGTGCCGCCGCCCACCACGGAACCCTACAGCCATATGTTCCCGGAGTGCGATCAATATTACCCTTGTAGCGGCATCACCACCAGTTGA
- Protein Sequence
- MVTVRNDSRVATVVPDFVLPQSSVADRPARENNETSRWQCGVWEEFGTTVTLLGRCRCTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQLQGVPPHLPQEISAEEPPGHFHCYQPVPPPTTEPYSHMFPECDQYYPCSGITTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -