Mvio001911.1
Basic Information
- Insect
- Megathymus violae
- Gene Symbol
- -
- Assembly
- GCA_003671415.1
- Location
- PDGT01000072.1:1573926-1586972[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.8e-11 8.2e-08 32.4 0.0 4 39 180 216 178 220 0.90 2 3 1.7e-12 1.8e-09 37.8 0.3 2 39 232 269 231 272 0.93 3 3 0.00054 0.57 10.5 0.2 2 24 287 309 286 310 0.91
Sequence Information
- Coding Sequence
- ATGCCGCGGTCGGGAGACGAACCGCCGCTGTTCAAGTGCGAGCCGCCGTCGCCGTCGGACGACGAGGACGCACGGTACCACCCGCCCTACATCGCTAATCAGCTCGCATCGCAGCTTCTACCTATAAAATTGGAAAGAGAAGGCTCCAGTGAAGAGAATGTGCACACGAACCTCTTACATCATTTGCAGCAATGCCTGGAGGAGCCGCCGGCACCAGCCGCGCCCACCGCCACGCCGGTGCGCGCGCGCCTGTCTGCGCCGCCGGCCGCGCCGCTGGAGATGCTCGAGACGCTGGAGCCCGCCACTCACGCCCCACACGCTCCACTACTGGGCACCGCCCTGATGGAGCGGCACGCGACGCTGCTGGCGACCACCGAGCTGCCGGCCTCGGCGGACTTCGTTCCTTTGCTCGCCGTCAAGGACGAACCGTTGTCTGAAGGAGAGGCGCATCAGCTGAGCGGTGACGACACGAGCGACTCCGGCGGTGCGCCGGCCGAAGCCCCCGCTCGCGGCTCGCCCAAGACCTGGTCACAACGAGACATGGAGAACGCTTTGGACGCGCTCAGGAACCACCACATGAGCCTAACGAAGGCGTCGGCGATGTACGGAATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGCGCCGCCAAGTCGTGGAGCGAGGGCGACCTGCGCGCCGCGCTGCACGCCCTGCGCGCCGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCGTACGGCATCCCTAGCAGCACGCTGTACAAGATCGCGCGCCGCGAGGGCATCCGTCTGGCGGCGCCGTTCAACGCCGCGCCCACCGCGTGGCGCCGCGCCGACCTGCGGCGTGCGCTCGACGCCATCCGCTGCGGCGCCAGCTCCGTGCAGCGCGCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCCAACTTCATCTGTCTGTCTCCAAATGGAGTCAGATGTCAACGAATATAATTTACTTTAGTTTTATATTAAATGAATACACTGCACATTTCAATATAACACGTCGCTATAAATATTGA
- Protein Sequence
- MPRSGDEPPLFKCEPPSPSDDEDARYHPPYIANQLASQLLPIKLEREGSSEENVHTNLLHHLQQCLEEPPAPAAPTATPVRARLSAPPAAPLEMLETLEPATHAPHAPLLGTALMERHATLLATTELPASADFVPLLAVKDEPLSEGEAHQLSGDDTSDSGGAPAEAPARGSPKTWSQRDMENALDALRNHHMSLTKASAMYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEGDLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLRRALDAIRCGASSVQRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQLHLSVSKWSQMSTNIIYFSFILNEYTAHFNITRRYKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -