Murs015904.1
Basic Information
- Insect
- Megathymus ursus
- Gene Symbol
- -
- Assembly
- GCA_003671415.1
- Location
- PDGT01000094.1:1165966-1169665[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.24 18 6.4 0.1 1 23 592 614 592 614 0.97 2 17 2.7e-05 0.0021 18.8 2.5 1 23 620 642 620 642 0.99 3 17 5.8e-06 0.00044 20.9 4.0 1 23 648 670 648 670 0.98 4 17 9.6e-07 7.4e-05 23.3 0.3 1 23 676 698 676 698 0.98 5 17 3.4e-05 0.0026 18.5 0.6 1 23 704 726 704 726 0.97 6 17 1.7e-05 0.0013 19.4 1.5 1 23 732 755 732 755 0.96 7 17 1e-05 0.00077 20.1 2.4 1 23 761 783 761 783 0.97 8 17 1.3e-06 9.9e-05 22.9 2.1 1 23 789 812 789 812 0.97 9 17 2e-05 0.0015 19.2 1.0 1 23 818 840 818 840 0.98 10 17 1.4e-06 0.0001 22.8 2.3 1 23 846 868 846 868 0.99 11 17 1.9e-06 0.00014 22.4 0.6 1 23 874 896 874 896 0.97 12 17 1.4e-06 0.00011 22.8 0.9 1 23 902 924 902 924 0.98 13 17 1.3e-05 0.00096 19.8 3.1 1 23 930 952 930 952 0.98 14 17 1.1e-06 8e-05 23.2 0.5 1 23 956 978 956 978 0.98 15 17 1.2e-06 9.4e-05 23.0 2.7 1 23 984 1006 984 1006 0.98 16 17 0.00042 0.032 15.0 0.6 2 23 1011 1032 1010 1032 0.95 17 17 0.00047 0.036 14.9 1.4 1 22 1038 1059 1038 1059 0.96
Sequence Information
- Coding Sequence
- ATGATgaataactatgtatatttattttacccgAACATATTGGTTGTCGACGATGTCCAGGCACTAGCCGCTGGGGCGGTGAATAATTTCAACGATAACCAAAATATCGATATGTTAAATTACGCTATTCTTAACGAAAATCAAAACGGTAATGTTCTGAATTATGATGCAGGTAACAAAAACCAAAATTGCGATGCTCTGAATTACGATGCAGTTAATggaaaccaaaataataatgtccTGAATTACGATACCGGCAACGAGAACCAAAAAAGTGACGTCCTGAATTATGGAACTGCTAACGAAAACCAAAAAAGTGATGTCCAAAATTACGATACTGCAAACGAAAACCAAAACATTGATGTGGTAAATTTTGATGCTGTGAACGAAAACCAAAACATCGATGTTATGAATTTCAATACTGTTAACGAAAGCCAAAACATTGATGTAATGATTTTTGATACAGTTAACAAAACTCAAAATGGCGATGTTCTGAATTACGACGCAGCTAACGAAAACCATAACATTAATGACATCAATTTCGATACAGTTAACAATAACCAAAATAGCGAGGTTCTGAATTACAACACTCTTAACGAAAATCAAAACATTGATATCCTGAATTACGATACTGtcaatgaaaaccaaaacattGATGTACAGAATTACGGTACTGCTAACGAAACCCAAAACATTGATGTGGAGAATTACACTATTGTTAACGAAAACCAGAACATTGATGTGGAAAATTACACTATTGTTAAcgaaaatcaaaatattgatgTTGAGAATTACACAGTTGTTAACGAAAACCAAAATATTGACGTGGAgaattacacaattattaacGAAAACCAAAACATTGATGTGGAGAATTACACAGTTGTTAACGAAAACCAAAATATTGATGTGGAAAATTACACAATTGctaatgaaaaccaaaacagTGATGTGCTGAATTACGGTACTgttaatgaaaaccaaaacattaatatattgaattacgATATTGTTAATGACACTCAAAACATAAGTTTGTTGAATTACAACGCAGTTAACgaaaaccaaaatattaatgTGCTGAATTACGACACTCTAAACGATAACCAGAACATAAATGTATTGAACTATGACACTCTTAACGGAAACCAAAACAGCGGTTTGCTGAATTTCAATACCGTTAACGAAAACCAAATAATTAACGTTCTGAATTACGATACTATTAACGGAAACCAAAACAGCGATGTGCTAAATTTCAATACTGTTAACGAAAACCAAATAATTAACGTGCTGAATTACGATACTATTAACGGAAACCAGAATAATGATCTGTTGACTTACAATACTTTGAACGACAATCAAAACATCAACGTACTGAACTACGATGCAGTTAACGGAAACCAGAacattaatgtacttaattACAATACTGTTATTGAGAACCCAAACATTAACTTAGTGAATTTTTATACCGTTAACGAAAACCAAAACATCGATGTGCTGAATTATAATACCGTCAATCAAAACCAAGTCGCTGATGTGGTAACTCAGGTTGGTGTTAGCGATGGCCAAACACAAACTGATGGTTATACCCTCGTGGATACACTTCCATGTGAAGATTTCTCTGCGATGAGCAGTTTTGACATAGCCGACGAACAACACGGTCCCACGCAGTGCACGACCGGGAGCCAAGTCCCAGAAGACTTTTACCACATGAACAGTGTCGCGCTTCAGAAACCGGAAGACGGCGGTAACCTCCTTAATAACAATCAGTTCTCCTGTAATATATGTTCTTTTCAAACGAGCGGTGACGTAGAACTCGCCAGTCACCTACAAATCCACGCCACGACCGCTTCATATAGCTGCGAAGTGTGCGATTACAAAACGAGCAGTAAGCCCCAGCTGACTCACCATCTGAGAACACATTCTGCTGAGAAGCAATTTCCGTGTCAACACTGCAAGAAGACATTTAGTCGAATGAGTAATCTACGAGGCCATTTGAGACAGCACGCCGGTGATAGGCCGTACGCGTGTAATATATGCGACAAAACGTTCATCAATAAGGATTATTTAGATAGACATGCCCGAATACATTCCGATGAGAAGCCATATGCGtgtgaaatttgtaaaaaagcaTTTGCTAAAAAACATTCTGTAGCGGTACACATGAGATTACATTATGGCAACGTGCAATATACGTGTAATCTCTGcaaaaaattgttcaaacaAAAGGATGCCCTACGACGGCATTGGAAACTTGTACATTTTTGTGACGAAACGCATCCATGTAATATCTGTGATAAAATGTTTAGCCACAAGGGAGACTTAGATAATCATCTGAAATTACATGCCGGTGAGAAACCATTTTCCTGTGATATTTGCAATAAAGGATTCATAAGGAAAGATCACCTTCAAAGTCATTTGAAGAGAATACATTCGAGCGAAAAACCGTTCTCATGCGAGATCTGCTCCAAGTCGTTTGTCAGCAATCTTCTTCTACAGAGGCATAAGAAAATACATACTGGTGAAAGACCATTTACCTGTGACATTTGTAAAAGGTCATACATAAGGAAAGATCAGCTAAAGACTCATTTGAAAACACACGTCAAAATCAAACCGTTTGCATGTAATATGTGTAACAGAGCATTTAATGTTAACTCCCTCTTACAAAAACATATGAAAATACATAGTGGTCAAAAACCATATCCGTGTGATAAGTGCAACAAATCATTCTTCAGGAAAGTTCTTCTAGAAAACCATTTGAGAGTACATTCCGGAGAGAAACCGTATCCATGTTACATTTGTGATAAATCTTTTGTATCACAGACTTGTCTactgaaacatttgaaaaaacatGCAGGATCTTTCTCATGTGATATCTGTGATAGATCATTCGAAGAAAATTATGCTTTGCAAAACCATTTGAGAACACATTCTGGTGAGAGACCATTTTCATGTGAAATTTGTCACCGGGCGTTCACTTCGAATAATTATCTAACTAAACACATGATAACCCACTCGAGATCACTTCAGTGCGATATCTGCAAAAAAACTTACGACAACGAGAAACTGTTAAAGGAACATTTGACGCTGCATTCTGGTCAAAAACCATATTCATGTGACAtctgtaaaaaacaatttaggCTAAAAACTTACctgttaaatcatataaaaaaaagaaaatgcaaCTAA
- Protein Sequence
- MMNNYVYLFYPNILVVDDVQALAAGAVNNFNDNQNIDMLNYAILNENQNGNVLNYDAGNKNQNCDALNYDAVNGNQNNNVLNYDTGNENQKSDVLNYGTANENQKSDVQNYDTANENQNIDVVNFDAVNENQNIDVMNFNTVNESQNIDVMIFDTVNKTQNGDVLNYDAANENHNINDINFDTVNNNQNSEVLNYNTLNENQNIDILNYDTVNENQNIDVQNYGTANETQNIDVENYTIVNENQNIDVENYTIVNENQNIDVENYTVVNENQNIDVENYTIINENQNIDVENYTVVNENQNIDVENYTIANENQNSDVLNYGTVNENQNINILNYDIVNDTQNISLLNYNAVNENQNINVLNYDTLNDNQNINVLNYDTLNGNQNSGLLNFNTVNENQIINVLNYDTINGNQNSDVLNFNTVNENQIINVLNYDTINGNQNNDLLTYNTLNDNQNINVLNYDAVNGNQNINVLNYNTVIENPNINLVNFYTVNENQNIDVLNYNTVNQNQVADVVTQVGVSDGQTQTDGYTLVDTLPCEDFSAMSSFDIADEQHGPTQCTTGSQVPEDFYHMNSVALQKPEDGGNLLNNNQFSCNICSFQTSGDVELASHLQIHATTASYSCEVCDYKTSSKPQLTHHLRTHSAEKQFPCQHCKKTFSRMSNLRGHLRQHAGDRPYACNICDKTFINKDYLDRHARIHSDEKPYACEICKKAFAKKHSVAVHMRLHYGNVQYTCNLCKKLFKQKDALRRHWKLVHFCDETHPCNICDKMFSHKGDLDNHLKLHAGEKPFSCDICNKGFIRKDHLQSHLKRIHSSEKPFSCEICSKSFVSNLLLQRHKKIHTGERPFTCDICKRSYIRKDQLKTHLKTHVKIKPFACNMCNRAFNVNSLLQKHMKIHSGQKPYPCDKCNKSFFRKVLLENHLRVHSGEKPYPCYICDKSFVSQTCLLKHLKKHAGSFSCDICDRSFEENYALQNHLRTHSGERPFSCEICHRAFTSNNYLTKHMITHSRSLQCDICKKTYDNEKLLKEHLTLHSGQKPYSCDICKKQFRLKTYLLNHIKKRKCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -