Murs005070.1
Basic Information
- Insect
- Megathymus ursus
- Gene Symbol
- -
- Assembly
- GCA_003671415.1
- Location
- PDGT01000007.1:1257212-1257793[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-09 3.3e-06 27.1 0.0 2 41 13 52 12 55 0.93 2 2 6 5.1e+03 -2.4 0.0 22 28 173 179 173 192 0.79
Sequence Information
- Coding Sequence
- ATGGAcggtgataaaattaaatactatagaTGGAACGAAGAGGACTTACAAAGAGCCCTATGGGCCTTAGAAAAAAAGGAGATGAGTCTCAATAAAATATCTGCAAAGTATTCTGTTCCAAAACCAACCATTTTGCGACatgcaaaaaagaaaaataagattgCCAATTATTCAGCGATTCATAAAGGTAGACCCACTACTTTCAGCACGAAATTGGAAAATATTctagtacaatatattttagaattagaaAAGCACGTGTTTGGATTGACTATCAATGACGTACGGAAACTTGCATTTGATATAGCGGAAAAGCATAACATTTGTCACAAATTTACTAAACAGAGGGAAATGGCTGGCAAAGCTTGGTTTTATGCTTTTAAAGGACGTCACTCAGAACTGAGTGTCAGACAGCCTGAAAGTACATCCATAAACAGAGTTAAGGGTTTTAATAGACAAAATGTTTATGGTTTCTATGATTTATTAGAGAAGATAATAGATGAAAATAGTTTAACAGCTGCAGACATATTTAACGTTGATGAAAGCGGATTTTCAACTGTTCAAATAAACCACAAAAAGTAG
- Protein Sequence
- MDGDKIKYYRWNEEDLQRALWALEKKEMSLNKISAKYSVPKPTILRHAKKKNKIANYSAIHKGRPTTFSTKLENILVQYILELEKHVFGLTINDVRKLAFDIAEKHNICHKFTKQREMAGKAWFYAFKGRHSELSVRQPESTSINRVKGFNRQNVYGFYDLLEKIIDENSLTAADIFNVDESGFSTVQINHKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -