Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.6 1.4e+03 -0.6 0.0 29 34 3 8 3 10 0.86

2 3 2.6e-12 2.2e-09 37.2 0.1 1 39 9 47 9 52 0.94

3 3 2.5 2.1e+03 -1.1 0.0 17 23 82 88 77 88 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.6	1.4e+03	-0.6	0.0	29	34	3	8	3	10	0.86
2	3	2.6e-12	2.2e-09	37.2	0.1	1	39	9	47	9	52	0.94
3	3	2.5	2.1e+03	-1.1	0.0	17	23	82	88	77	88	0.85

Coding Sequence: ATGCCTCCCAAACGGACATTGTGGTCAGAAGACGACCTGATCTCAGCTGTTCGAGCAGTACAAAGAGGAGCTATGAGTACGTATACGGCTGCAGAAAGATATAAAGTTCCTAGAAGAACAATCAGAAATCATCTGCAGTCTGGCAGTTTAAAGAAAACTTTGGGACGTAAACCTATATTGAATACTGAAGAGGAAGCTCAACTTGTGCAAAGGTTTAAAGCGTTCATGAAAAGACACCCTGAAGTATCGGTCAGAAAAGCTCAATTTATGAACCCAGCAAGAGCccaaaaacttaataaatttattgttgacGACCACTtccaaaaattgaaaatatTCTTCCGAACATGCAGAAAGCGTTACGATTGCAGGATGTGTTAA
Protein Sequence: MPPKRTLWSEDDLISAVRAVQRGAMSTYTAAERYKVPRRTIRNHLQSGSLKKTLGRKPILNTEEEAQLVQRFKAFMKRHPEVSVRKAQFMNPARAQKLNKFIVDDHFQKLKIFFRTCRKRYDCRMC

Sequence clustering based on sequence similarity using MMseqs2