Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00029 0.24 11.5 0.0 26 39 2 16 1 20 0.82

2 5 1.1e-12 9.4e-10 38.4 0.3 2 39 32 69 31 72 0.93

3 5 1.5e-08 1.3e-05 25.1 0.1 2 30 87 115 86 116 0.94

4 5 0.026 22 5.2 0.0 31 45 163 178 162 178 0.92

5 5 4.9e-19 4.2e-16 58.7 0.0 1 43 185 228 185 229 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00029	0.24	11.5	0.0	26	39	2	16	1	20	0.82
2	5	1.1e-12	9.4e-10	38.4	0.3	2	39	32	69	31	72	0.93
3	5	1.5e-08	1.3e-05	25.1	0.1	2	30	87	115	86	116	0.94
4	5	0.026	22	5.2	0.0	31	45	163	178	162	178	0.92
5	5	4.9e-19	4.2e-16	58.7	0.0	1	43	185	228	185	229	0.96

Coding Sequence: ATGTACGGAATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGCGCCGCCAAGTCGTGGAGCGAGGGCGACCTGCGCGCCGCGCTGCACGCCCTGCGCGCCGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCGTACGGCATCCCTAGCAGCACGCTGTACAAGATCGCGCGCCGCGAGGGCATCCGTCTGGCGGCGCCGTTCAACGCCGCGCCCACCGCGTGGCGCCGCGCCGACCTGCGGCGTGCGCTCGACGCCATCCGCTGCGGCGCCAGCTCCGTGCAGCGCGCCGCCGCGCACTACGGCATACCCACCGTTGTACCAGATTTTGTGCTGCCGCAAAGTTCGGTCGCGGATAGACCGGCGCGTGAAAATAACGAGACGTCGCGATGGCAGTGCGGCGTGTGGGAAGAATTTGGTACCACTGTGACATTGTTGGGTCGTTGTCGGTGCACAGGCACGCTGTACGGACGGTGCAAGCGAGAGGGCATCGAGCTGTCCCGCTCCAACCCGACGCCGTGGTCCGAGGACGCCATGGGGGAAGCGCTCGAAGCCGTCAGGGTGGGCCAGATGTCTATCAACCAGGCGGCGATCCACTACAACCTGCCGTACTCCTCCTTGTATGGCCGCTTCAAGCGCTGCAAGTACCAACTACAGGGTGTTCCCCCGCACCTGCCGCAGGAGATATCCGCGGAGGAGCCCCCGGGGCACTTCCATTGCTACCAGCCAGTGCCGCCGCCCACCACGGAACCCTACAGCCATATGTTCCCGGAGTGCGATCAATATTACCCTTGTAGCGGCATCACCACCAGTTGA
Protein Sequence: MYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEGDLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLRRALDAIRCGASSVQRAAAHYGIPTVVPDFVLPQSSVADRPARENNETSRWQCGVWEEFGTTVTLLGRCRCTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQLQGVPPHLPQEISAEEPPGHFHCYQPVPPPTTEPYSHMFPECDQYYPCSGITTS

Sequence clustering based on sequence similarity using MMseqs2