Basic Information

Gene Symbol
nfxl1
Assembly
GCA_900490015.1
Location
UELV01097508.1:6131-9180[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 2 3.4e+04 -5.0 1.9 15 19 123 127 123 127 0.85
2 17 0.81 1.4e+04 -2.9 0.2 4 10 158 164 158 164 0.87
3 17 2.2e-08 0.00038 21.3 18.3 1 19 172 189 172 189 0.99
4 17 7.7e-07 0.013 16.4 16.3 3 19 227 243 225 243 0.94
5 17 5.6e-05 0.97 10.4 8.9 1 19 278 297 272 297 0.90
6 17 0.00014 2.4 9.2 9.9 1 18 333 350 333 351 0.97
7 17 0.0068 1.2e+02 3.8 7.6 1 12 385 396 385 396 0.94
8 17 1.2 2.1e+04 -3.4 1.7 6 10 406 410 406 410 0.97
9 17 8.7e-08 0.0015 19.4 14.6 1 19 416 434 416 434 0.93
10 17 0.00011 1.9 9.5 7.6 9 19 482 492 480 492 0.90
11 17 0.00015 2.6 9.1 6.6 1 12 502 512 502 512 0.95
12 17 0.85 1.5e+04 -2.9 5.8 14 18 543 547 543 548 0.89
13 17 1.6 2.7e+04 -3.8 0.6 9 12 565 568 565 568 0.77
14 17 7.7e-05 1.3 10.0 7.3 1 12 584 595 578 595 0.91
15 17 0.61 1e+04 -2.5 1.0 6 10 611 615 610 615 0.88
16 17 0.005 85 4.2 14.8 3 19 624 640 623 640 0.91
17 17 2.1e-06 0.036 15.0 8.8 1 18 685 704 685 705 0.89

Sequence Information

Coding Sequence
ATGAGAAAATTTAGAAGAGCTCAAGCGCAAAATCAAGCATCAATTGAAAAACATTTAGAGGCTAATGTTGCTGAATCCTCTAGCAGTGATGATGAAAATGAGGAAGTATTGGAAACAGCTGTGGAAAAAGTTTTATCGAATTATCAATTTGAAGGTGGCGATGTTAATAAGACTTTGAGTTATTTGACTGAAACTTTTCAGTCAGGTGGAGCAGTTTGTTTAATTTGCATTTCTTCAGTAAAAAAGACTGATGCTATTTGGAACTGTATGGAGTGCTACACTTTTATGCATTTGCCTTGTATTCAACATTGGGTGAGAGACAGTTTAAGCTACAAACATGAGAAAGGAATCACACCGTTATGGGGATGtcCAAAATGTAGAGCAGAATACCGAGAAGATCAAATACCAAGAAAATATGTATGCTTTTGTGGAAAAACTGATGATCCATCCTATCAGCCTTGGTTGATTCCACATTCTTGTGGAGATATGTGCGGAAAGTTATTGCAACCAAAATGTGGTCACAAATGCACACTTCTATGTCATCCAGGTCCCTGTCCGCCATGTCCAAAAATGGTATCAACTGCATGTTTCTGTGGAAAACAAGCACCTTGTCCTCAGAGGTGTAATGCTAAAGAATGGAGTTGTGgggaaatttgtaataaaaggtACAAAACTTGTGAACATAAGTGTACAAAGCAATGTCATTCGGGTCCATGTCCACCTTGTTCAGAAAAAGTGCTTACTGCCTGTAATTGTAAGCATAAATCTGAATTGAGAAAATGTAATGAATCTTTTTGGCATTGTGATAAAGTATGTGGGAGGCGCTTTTCTTGTAATGTTCATGTTTGTGAAGACTTTTGTCACAAACCAGGAGATTGCTCTACATGTCCGCTAGAACGAAATAGAACTTGTCCatgtagtaaaaaaaagtattcaataTCTTGCACTCAGCAACAAGTTCCAACATGTGGAGATActtgtggaaaattattagattgTGGGGCTCATAACTGCAACATGAGATGTCATGCAGAGCGCTGTGGGCAATGTCTAGAAGTTGTAACAAAAGCTTGCCGTTGTGGTAGTTTCAGTAAAGAAATTGCTTGTATCAAAGAATTTCactgtaataaaaaatgttcacAGATGAGGCTCTGTGGTAGacatttatgtaataaaaagtGTTGTGATTGTTTGATaagaaacaattttaatatttgtgaGAAGGTGTGTGATAATACATTGAACTGTCGTAAGCACAAATGTTCTGCTCCTTGTCACAGTGGACCTTGTTATCCATGTCCTCGCACTATTGTAATTCAATGTCGTTGTGGTAATAGTAAAATTACTGTTCCTTGCGGGACAGTCAAGAAAATTAAACCTCCACACTGTAATAAAATGTGTAAGATTCCACCAATCTGTCATCACCCTAAAAGAGAGTCACACAAATGTCATCAAGGTGCTTGTCCACCATGTCGTAAGATTTGTGGTTTAACCCATAAAAGATGTGGTCATACCTGCCCAGCTCTCTGCCACACTAAAgtttggacaaaaataaaaccaaatgGAGTTACTAAACCTACTGGACCATGGGACAATCAAAAAGAAAGATGGGAGTACAAGACTTTTCCCTGTCCTCCTTGTGAAGTTTCTGTTATGGTTACATGTCTTGGTGGACATGAAACTCTTCCATGGCCTTGTCATAAAGCTATTTCTAACTCTTGCCTTAGAGAATGTGGTCAATTATTATCTTGCACAAATCATACTTGTGAAAATCCTTGTCATAAATTACAATCGCCAAATGATAATACCGATGAAAATAagtgtatggactgtgaaaaacCATGCATCTTTGCAAGGCCTAAAGGATGTACACATGTCTGTCCAAAATCATGTCACCCTGCTCCATGTGCACCGTGTAAACAGCTTGTAAAAGTTCCTTGTCACTGTAGTATTAATACACTTTATATACGTTGTGCTGAATTGACCTCTGCCACTGCTGAGAAGCGcaatgaaattttacaatgtgGAAACCAATGTCCTCGAAATTACCCCTGTGGTCATCGCTGCATCGATAATTGTCATGCTGGAGCATGTCAAAAAGTTGAATCTTGTAATAAGAAGGTAAAAGTGTTATGTAAATGcaaacgaataaaaaaagatttttcatgTATCTTAGTTCGTGCTGGAAGAGCGAGTGTGCTGTGTGATGATATATGtcagaaaaagaaagaggagtTAGACAGAGTTAGACAAAttgaagaagaaaagaagagaaaagaagaagaacttaaaaatcagaaagAAATTGAAATGTTTGAAAAGAAATTCAAACCTAAAAGAAGAGGAAAGGATCGTCATCATAATAAAGAGCAATCAGATGATAATAGTAGTTCCTATAAATGGATGTGGATAATTGCTACTCTAATGATTGGTATTTCCATTGTAGTGATATTAACATTCCAAACAAACTTGTTAATTgaatga
Protein Sequence
MRKFRRAQAQNQASIEKHLEANVAESSSSDDENEEVLETAVEKVLSNYQFEGGDVNKTLSYLTETFQSGGAVCLICISSVKKTDAIWNCMECYTFMHLPCIQHWVRDSLSYKHEKGITPLWGCPKCRAEYREDQIPRKYVCFCGKTDDPSYQPWLIPHSCGDMCGKLLQPKCGHKCTLLCHPGPCPPCPKMVSTACFCGKQAPCPQRCNAKEWSCGEICNKRYKTCEHKCTKQCHSGPCPPCSEKVLTACNCKHKSELRKCNESFWHCDKVCGRRFSCNVHVCEDFCHKPGDCSTCPLERNRTCPCSKKKYSISCTQQQVPTCGDTCGKLLDCGAHNCNMRCHAERCGQCLEVVTKACRCGSFSKEIACIKEFHCNKKCSQMRLCGRHLCNKKCCDCLIRNNFNICEKVCDNTLNCRKHKCSAPCHSGPCYPCPRTIVIQCRCGNSKITVPCGTVKKIKPPHCNKMCKIPPICHHPKRESHKCHQGACPPCRKICGLTHKRCGHTCPALCHTKVWTKIKPNGVTKPTGPWDNQKERWEYKTFPCPPCEVSVMVTCLGGHETLPWPCHKAISNSCLRECGQLLSCTNHTCENPCHKLQSPNDNTDENKCMDCEKPCIFARPKGCTHVCPKSCHPAPCAPCKQLVKVPCHCSINTLYIRCAELTSATAEKRNEILQCGNQCPRNYPCGHRCIDNCHAGACQKVESCNKKVKVLCKCKRIKKDFSCILVRAGRASVLCDDICQKKKEELDRVRQIEEEKKRKEEELKNQKEIEMFEKKFKPKRRGKDRHHNKEQSDDNSSSYKWMWIIATLMIGISIVVILTFQTNLLIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01470178;
90% Identity
iTF_00969272;
80% Identity
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