Msti019462.1
Basic Information
- Insect
- Megastigmus stigmatizans
- Gene Symbol
- -
- Assembly
- GCA_900490015.1
- Location
- UELV01080609.1:6221-12054[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.1 13 7.3 6.3 1 23 353 375 353 375 0.97 2 19 0.00025 0.034 15.5 1.1 1 23 424 446 424 446 0.97 3 19 0.035 4.6 8.8 0.1 1 20 501 520 501 522 0.93 4 19 0.035 4.7 8.8 0.6 3 23 564 584 562 584 0.96 5 19 0.00044 0.059 14.7 0.2 1 23 621 643 621 643 0.97 6 19 0.00029 0.039 15.3 0.1 1 23 649 671 649 671 0.97 7 19 3.1e-05 0.0042 18.4 2.7 3 23 716 737 715 737 0.95 8 19 0.0065 0.87 11.1 0.4 2 23 745 767 744 767 0.91 9 19 0.00013 0.018 16.4 1.2 2 19 795 812 794 817 0.89 10 19 0.00016 0.021 16.2 0.8 1 23 847 869 847 869 0.92 11 19 0.13 18 7.0 0.0 2 20 927 945 926 945 0.95 12 19 0.0018 0.24 12.8 0.1 2 23 964 985 963 985 0.97 13 19 0.0017 0.22 12.9 2.6 1 23 1013 1035 1013 1035 0.97 14 19 0.0043 0.57 11.6 1.7 3 21 1056 1074 1055 1078 0.88 15 19 0.083 11 7.6 2.5 2 23 1135 1157 1134 1157 0.94 16 19 0.046 6.1 8.4 3.2 3 23 1188 1209 1186 1209 0.90 17 19 0.003 0.4 12.1 0.2 1 23 1216 1240 1216 1240 0.94 18 19 0.005 0.66 11.4 3.5 1 23 1245 1268 1245 1268 0.97 19 19 0.009 1.2 10.6 0.6 3 23 1300 1321 1298 1321 0.95
Sequence Information
- Coding Sequence
- ATGGACGATGTCGTGGAGATCAGCGGCTTGGAAAATGCTTGCAGGCTGTGTCTCACCACTGAACGAACAAGGTCATCAATTTTTGGCGTACCTCATGTATCTGTGCCCTTTGTCGACAAGATACGCTCTTGTTTGTCAATTCAGGTATCATCCACCGATAAAGTATCGACACTAGTATGTACAGCTtgtataaagaatataaatcaCTGGCATGCTTATAAGGACACATGTTTGCACTCACAGGAAAAGCTTCAGCTATGGTTAACAAAACACAACTGTGTTATTCATCCTATGGTGACTGTAAAAGAAGAACCAGTGGATGTGGAATATACAGATGATAATCCACAAATTTTGGCAAATGACTCTAATACTCTTAACAATGTTACACCAAATGAGAAGAGTATGGAAGCTGCTAATGAAAGTAATTTAGCTTCGGCAACAAATAAAGTGGTGCAGGAAATACCAGAACAACATTCAAAAGTTAATGATAGAATGCACAGGGATTTTTCTCCAATAATACAAATCAAAACCGAGCCTATAGATACAGAAGATGAAGATGATTGTAATATAGACATTGAATCTGTAAATGGTCCACAATTTTTGCTAAATCCAATGGCAGTAGGTATAGGAAATACTGTTAATAGTGATAGAGTTATGGAGGCAGATTCAACCCAAAAATTCAGTATAAGAAGGTAtggaacaagaaaaaaaatgcgccGTGGACCCCATACTCATTACAGGGGTATTCGACtcttcaaaaaaaaatgcattcattgtaaaataaactTGCACTCCAAGCATTCATATATGCAACACATGTCCAGATATCATGGTATTGCCAACCATCTAGCTGCAAACGATTTTCCAAAGCCTCCAAGTCAGCCTCCAGTAAAAAGACGAAGAAAATCAAAACTTTCTCAGCGTGCAGAAAATGTTGATGTTGATCTAGAGGatcaaaatcaaattattaatcCTGAAGATGCTAAGTATGAGAAAATGATAACAACTGATCCTCTAACACCAGTTCAAAGGAACATTATTGGACAACTGAAGACATTCTCTTGTTACTCGTGCAAAAAGACCTTCTTTGATCGTCGACACACTCTAAATCACATCAGGCAACACATGCCAGATCTACGACCCTATACATGCATTGCATGTCTTTCTGAATTCTCTGACAGATCAATGTACAAATTGCATTGTGGTGCATCTTTCGAGTGTGCTATGAAAATTGCCCTAGTAGTCCCTAAAATCGGCTTTGAGAAGTATTTTACTTGCAACATGTGCTTACGTTCATTCAGCAATCGCCAAGAACTTCTATCTCATCTTTCTGAGCATGCTGATAAGCAGAACAAACAGCAGCCTAAATCTACAAGATCTCTACCTAAGCTGAAACCGATAAGCTCATCAACACCAGCTCCTGGAATCGACTCTTCCCCTCCAAGAAAAACTATTCCTTGTACCAATGGACCATATATGAATGGAGATCCAGCACACAACCACATGTGTGATCTATGTGGTATGATTTACAGATACAAACCGAATGTAATTAAGCATCGCGACATGTGCGCCACTTTATCAAACAAGGTTCGGACTTCCTTTAGGTGTGTCCACTGTCAGATGACTTACCTTGTctacaaaaagttttatagcCACGTTTTGTACGAACATAAAAAGCATGAAATTATCTGCTATACGTGTAATGAAAGTTGTCCCACTCCTGAAGCTTATCTCGCACATCATGAGACGCACCGGAATCTCTTTAATAAACAAACTGAGCAGCAGCCGAACGATGATCTTTCATTGGCGATAGATTCTTTGGGTAATTCGGAGCAGCCACCGGAAAACGGCGAAAAACAATTTAACTGTGCGCTGTGCGGTGAGAACTTCGCTACTAAAATTGAACTAACCGAGCATCGGAACCTTCACCTTAAAGTAAAAATCTACTCGTGCGTCATCTGTCGCAGTATGTTCAGCAGCTCGGGTGCCTTAGAAGCGCACATGAAAGATCACGGAATAGAGGATCCCAGCGAACAGAATGCCAACAGCTCATGTATCGAATATGGTCGTGGAAATCGCACCAAGAACAATCTACTTGATACTTCTGTATCTGCTACATCGGATCCTGGTACTGGCATGAATCATTGTTTTGAATGCGGTAAAAACTTTTCCAATTATGCAAACTTAAAGAGACATGAAAGAAATCTTCACATCAAGCAGAAACGCCGTTGGAGTTGCGATAAGTGCAAGCGACGCTTCAAGTCTGCGCAAGCCTACGAAGAACACGTGAGTTTGGATCACGGACCCCAGCAACACCAGCTTGATAATATCGTGCCTGCGCCACAACCTCAGCTATCCTCTTCGTCTGGAAGGCCACTGATGCAGTGTCCCAAATGTCCAAAGACTTTCACTTACCAGGGAAATCTGATACTCCATTGCCAGAACGTGCACAAGGAGAATCATTTCGAACGCGCAAAGGCAACCTCCAATCGTGCATCAGCTCCTAATGCACATATTCCAGCGACTCTTTCGCGAGGTCATGCCTGCGACATATGCGGCAAGACCTTCCGCGAGGAGCAGTCACTTAAAACTCATCGTGGCTGGCATCTGCGCTCGAATTATAAACTGAAAGTAAACACCGTGATGAATGTGGACCGAAGCGCGATAAACAATCCAGGATACACGATGACGGTGGCAAGCTCGCCTAAGCCGGCAAAGGCAAGGAAATCATTCCCCAATAATCCATTGCAAAAGCAGCTGAATGCAATCACCAGTTTGCAATGTCAAGTTTGCGATGATCGATTCCCGGATGTCGCAGAGTTACGAAAACATCTATGGGACGTGCACTGCGCGCGCAATAAGCCCGAGAAATCATTCACGAGCGAACTGCAGTGCGAGCTGTGCACCAATAAGTTTCCCGACGAAGAGTCTCTAGAGGACCATATGAAGTGGCACTCGCAGAATCCAATACTCAGCAGCAATACCaatagcaacagcagcaacgcgAGTGCAAACATCGAAGTCAATAAGAAATCATTCTACTGCGACATTTGTGGCAAATACTATAGTAACCGAAAGGTCTTCCTGCGCCATAAAAAGCTCCATAAAGTATTGCCTGCCTCGACGATGCTGAACCTCCACTCGTTGCAGACTAAACGCCCCTATTGTCAATCCTGCCAAAAGAGCTTCTCCACAGATGCGTCGCTTAAACGTCACAAAGCATCCCCGTGCCACATGAGCTTCGTGCGATCGCAATCACAGACTGTTCCCAAAAAGATAACGACAACGGCGATGGTGCATCACCCACCTCCAGAACCAATGAGGATGCAGTCGGTGAAAAAGGAGCCGGGCGTCGATTATGCCTCGCAGCAATCGGCTTTATCTTCCAGGAAGAAGACCGTCACGTGTCACATATGCAAGACGATTTTCCCTAATATGAGTGTACTCTACCACCACAAACAGCTTTCGCACAGCAAAGGACATACCGGAGGTAGGGAAAAGTCGAGCGTTTCACAAAAAATCGAATGCGTGCCACTCATGAGCAGCGAGGGCACGGTTTGCTGCAATTTGTGTGGCAAACAGTTTCCCGGATTACCAAATCTGAAGCAGCACTTTTCGCACAAGCACAAAACCAAGAGTGCCACGTATCCCTGTTACTCGCCGGGCTGTAAGCTCGTCTTTTCGAGCGCAAACTCACTGAAAAGTCACGAGACCACACATTCTAGCATGATTTACAATTGCCATCTGTGTGATAGGCATGTATTCTCGAAGGCAGCGATGACTAAGCATATGTTAACCATGCACAAAGCTATCTATCAATCGGGGGCGAATAAGAACACCATGTGGTCCGAGACCGATTTAACTACGTACAGTATAAAGAATGTGCAGAGCACCAATTGTCCCAAGTGCAAGATCAAGTATCCGAATCTGAGGGCGCTGAAGATTCATTATCTCAAGTTCCATGAGAAAACATAA
- Protein Sequence
- MDDVVEISGLENACRLCLTTERTRSSIFGVPHVSVPFVDKIRSCLSIQVSSTDKVSTLVCTACIKNINHWHAYKDTCLHSQEKLQLWLTKHNCVIHPMVTVKEEPVDVEYTDDNPQILANDSNTLNNVTPNEKSMEAANESNLASATNKVVQEIPEQHSKVNDRMHRDFSPIIQIKTEPIDTEDEDDCNIDIESVNGPQFLLNPMAVGIGNTVNSDRVMEADSTQKFSIRRYGTRKKMRRGPHTHYRGIRLFKKKCIHCKINLHSKHSYMQHMSRYHGIANHLAANDFPKPPSQPPVKRRRKSKLSQRAENVDVDLEDQNQIINPEDAKYEKMITTDPLTPVQRNIIGQLKTFSCYSCKKTFFDRRHTLNHIRQHMPDLRPYTCIACLSEFSDRSMYKLHCGASFECAMKIALVVPKIGFEKYFTCNMCLRSFSNRQELLSHLSEHADKQNKQQPKSTRSLPKLKPISSSTPAPGIDSSPPRKTIPCTNGPYMNGDPAHNHMCDLCGMIYRYKPNVIKHRDMCATLSNKVRTSFRCVHCQMTYLVYKKFYSHVLYEHKKHEIICYTCNESCPTPEAYLAHHETHRNLFNKQTEQQPNDDLSLAIDSLGNSEQPPENGEKQFNCALCGENFATKIELTEHRNLHLKVKIYSCVICRSMFSSSGALEAHMKDHGIEDPSEQNANSSCIEYGRGNRTKNNLLDTSVSATSDPGTGMNHCFECGKNFSNYANLKRHERNLHIKQKRRWSCDKCKRRFKSAQAYEEHVSLDHGPQQHQLDNIVPAPQPQLSSSSGRPLMQCPKCPKTFTYQGNLILHCQNVHKENHFERAKATSNRASAPNAHIPATLSRGHACDICGKTFREEQSLKTHRGWHLRSNYKLKVNTVMNVDRSAINNPGYTMTVASSPKPAKARKSFPNNPLQKQLNAITSLQCQVCDDRFPDVAELRKHLWDVHCARNKPEKSFTSELQCELCTNKFPDEESLEDHMKWHSQNPILSSNTNSNSSNASANIEVNKKSFYCDICGKYYSNRKVFLRHKKLHKVLPASTMLNLHSLQTKRPYCQSCQKSFSTDASLKRHKASPCHMSFVRSQSQTVPKKITTTAMVHHPPPEPMRMQSVKKEPGVDYASQQSALSSRKKTVTCHICKTIFPNMSVLYHHKQLSHSKGHTGGREKSSVSQKIECVPLMSSEGTVCCNLCGKQFPGLPNLKQHFSHKHKTKSATYPCYSPGCKLVFSSANSLKSHETTHSSMIYNCHLCDRHVFSKAAMTKHMLTMHKAIYQSGANKNTMWSETDLTTYSIKNVQSTNCPKCKIKYPNLRALKIHYLKFHEKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00969032;
- 90% Identity
- iTF_00969032;
- 80% Identity
- -