Msti016359.1
Basic Information
- Insect
- Megastigmus stigmatizans
- Gene Symbol
- -
- Assembly
- GCA_900490015.1
- Location
- UELV01180201.1:2429-5199[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.086 11 7.5 0.0 1 23 306 328 306 328 0.94 2 12 0.3 40 5.8 0.8 2 19 331 348 330 351 0.91 3 12 3.6e-06 0.00048 21.3 4.1 2 23 390 411 389 411 0.97 4 12 1.2e-05 0.0016 19.7 0.3 1 23 417 439 417 439 0.98 5 12 0.00061 0.082 14.3 2.6 1 23 445 467 445 467 0.98 6 12 5.4e-05 0.0072 17.6 1.8 1 23 473 495 473 495 0.98 7 12 0.00018 0.023 16.0 1.5 1 23 501 523 501 523 0.98 8 12 5.6e-07 7.5e-05 23.9 0.5 1 23 531 553 531 553 0.98 9 12 0.0051 0.68 11.4 0.2 1 23 559 581 559 581 0.94 10 12 1.1e-05 0.0015 19.8 2.9 1 23 587 609 587 609 0.98 11 12 1.2e-05 0.0016 19.6 0.6 1 23 615 637 615 637 0.98 12 12 0.0024 0.32 12.5 3.2 1 23 643 665 643 665 0.97
Sequence Information
- Coding Sequence
- ATGACAGCTATTGAAGAATTTGATTATTTATGTCGGCTATGCGCTACAAAAATGGGTATTCTTATGGGACTACCCATTTTCGAGGCTGGGGGGGAGCAACTAcgaaatattgataaaaaaattgctgCTTGTCTACCTGTTCAGatttcAATTACAGACCAGTTACCAAAAGTAATATGTGAAGAATGTGCTTTTAAAGTAAATGACCTTtttgattttcatgaaaaagttCTGCAAACTGAAGGCATGTTTATGGACATGTTAAAAACTATTAGTAAAAAAGAAGTGAATAATCTTGAACATGTTACTATGAGCAGTATTCAAGGAAATATAGACAGGCTTACTAACAGCATTCCTAGTGATATTGAAGAAATAGAAAGTGTTGATATTGCCAGACacattaaaaatgatattcacACCATACCTGTGATAGATAACATGAGACTTTCCATTGGAGAACAAGTAGTTTCACATGAGGAAATAACTGATGAaATTAAGGTCTCAAAAGAAGATATAGCGATGCATCTTGAAGGTGATATATCGGTGAATGTAGAGAACCTGACTGTTGGCGGTCACTTCAATCAATTAGACATGAACTACGTAAGCTGTATAACCTCGGAGGTTGAAATACAAAAGCCAGAGAATCAGTATTGCAACGATATAAAGTACGAGGCAGTCACACCTAAGGATCTGCAGGATAAATTGCATAGCTGTGAGACATCTGGCAATGAGTGCGACGATCCTTTGAATCTAAACGATACTTCTGTTCACTCGTATTCTTTACCGTCCACGAGTCACGTCGATACCACCGATAATTCAGATGGAATCATGGTGCAGTACACGAAAGACACCAAGAATGCACTTGTCGAAAGCGCACTAAATAATCCTACGATTGATGAGACTGAAGCAAACtgGTACATTTGTCCATTCTGCAACGAAGCTGCTTCAGAACCGAACAGCCTGGCTGCACATTTCGAGCAACACTTTTGTAGCTGTCCCAATTGCGAGATGTTTTTTATAAGTATTGAAGCACTCAACCTTCACAACTGTATCGAACagaaaaataagataaatgTAGGTAAGAGTATCAACAACTCAGCCCCAAAGCGTCAGCGGAAGGCATCTGAAAAGAAACAGCAAGGTTCTCGACCCAAATGGACACCAAAGGTCTGCAGTCATTGTGGAAAGCAATATCGAACGAATTATAAACTTCAGGAACACATGCGCAAGCATACGGGTGAAAAGCCCTTCCAATGCGAGCTCTGCAATAAGGCATTCCGAAGTAAAATAGGTTTGGCTCAACACACGGCGACCCACACGGGTCAATTCGATTTCAACTGTTCGACCTGCGGCAAGGGCTTCCAATGCAAGAGTTACCTCATCGTTCACCAGCGCGTACACTCGGATCTCAAACCTTATTCCTGTACAATTTGCAACCAGAACTTTAAGACTAAACAGTCGCTGCTAGATCACGAAAACCGTCACAAGGGTGTCAAGCCTTACACCTGTGAAATTTGCGGTCGAGGTTTCATCACCAAGGGCTTGTGCAAGAGCCATCAGAAGATTCACTCAGGGATGGATAACAGACAGTATCCCTGCGTGGTTTGCAATAAGATGTTCGTCAGCAAGAGTTATCTTAATACACATCTCAGAATTCACACCGGTGAAAAGCCATACCTGTGTGAGGTTTGTGGTAAGGGTTTCCTAACAAGAGTTGACCTCAAGATCCACTCAACGATGCACACCGGTGAAAAGAGCTTCAAGTGCGACCTGTGCGGCAAGGTATTCGCGAGGCGTTCAGCTTTACGCTGTCATAGGCGCTCACATACCGGCGAACGACCTTACAGATGCGAGATCTGCGGCAAGACTTTCACGCAATTCAGCCCTATGGCGATACACAAAAGACTGCACACCGGCGAACGGCCCTACGAATGCGACGTGTGCAATAAAGCTTTCGTCTCGAGATCGACGATGATGTGCCACAGAAAGAAACATAATATTAACGCATCGTCGAATACCGAACTAAAAGCAGCCAAGGACGATTTAACGCAGCAGCAGGAACAAAAAGAAGCGGCTTTCAAAGAATCGCAAGATGCGAACGTATCTGTAGCTACAAATTGA
- Protein Sequence
- MTAIEEFDYLCRLCATKMGILMGLPIFEAGGEQLRNIDKKIAACLPVQISITDQLPKVICEECAFKVNDLFDFHEKVLQTEGMFMDMLKTISKKEVNNLEHVTMSSIQGNIDRLTNSIPSDIEEIESVDIARHIKNDIHTIPVIDNMRLSIGEQVVSHEEITDEIKVSKEDIAMHLEGDISVNVENLTVGGHFNQLDMNYVSCITSEVEIQKPENQYCNDIKYEAVTPKDLQDKLHSCETSGNECDDPLNLNDTSVHSYSLPSTSHVDTTDNSDGIMVQYTKDTKNALVESALNNPTIDETEANWYICPFCNEAASEPNSLAAHFEQHFCSCPNCEMFFISIEALNLHNCIEQKNKINVGKSINNSAPKRQRKASEKKQQGSRPKWTPKVCSHCGKQYRTNYKLQEHMRKHTGEKPFQCELCNKAFRSKIGLAQHTATHTGQFDFNCSTCGKGFQCKSYLIVHQRVHSDLKPYSCTICNQNFKTKQSLLDHENRHKGVKPYTCEICGRGFITKGLCKSHQKIHSGMDNRQYPCVVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCDLCGKVFARRSALRCHRRSHTGERPYRCEICGKTFTQFSPMAIHKRLHTGERPYECDVCNKAFVSRSTMMCHRKKHNINASSNTELKAAKDDLTQQQEQKEAAFKESQDANVSVATN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00969026;
- 90% Identity
- iTF_00969026;
- 80% Identity
- -