Msti014262.1
Basic Information
- Insect
- Megastigmus stigmatizans
- Gene Symbol
- cheC
- Assembly
- GCA_900490015.1
- Location
- UELV01117791.1:1-787[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.7e-08 5.2e-05 23.8 0.0 7 37 29 60 25 65 0.86 2 2 4.9 2.6e+03 -0.9 0.1 15 22 145 152 139 153 0.78
Sequence Information
- Coding Sequence
- aAAGTAAATCTAACCTCAATAGCCATGGATAAGATTCccaagcaaaagaaaaaaaataaagcctACAGGACACAAAACATGTTTGATGCTGTAGAAGTAGttaaaacaaatcatttaacTATGAGAGCAGCTGCTAAGAAGTACCAAGTTCCCTTCTCAACACTATACAATAAGTGTAAAGGTGAAACAGACCTTGATGCGAAGCCTGGACCTGCTACAGTATTGAGTGCTAACGTAGAAGCTCGAATAGTAAATTGGATTAAGGAAATGAGTAGATCAGGTTTTGCTATTGACAGAGAGCAACTGCTCATGTGTGTTCAAAGGTATGTCAAAGATACAAAGTGTGAAACTCCATTTGTAGATGGTAAGCCATCTAAGAGATGGTTTACAAGCTTCATGAAACGTCACCCagatgtaaaaatgaaaatgtctcAAAATATGTCATTAAGAAGAGCTGAAGTTAAAGAGCAGGATATAAGAGTATGGTTTGCAGAGGTAAAAGG
- Protein Sequence
- KVNLTSIAMDKIPKQKKKNKAYRTQNMFDAVEVVKTNHLTMRAAAKKYQVPFSTLYNKCKGETDLDAKPGPATVLSANVEARIVNWIKEMSRSGFAIDREQLLMCVQRYVKDTKCETPFVDGKPSKRWFTSFMKRHPDVKMKMSQNMSLRRAEVKEQDIRVWFAEVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00969505;
- 90% Identity
- iTF_00969505;
- 80% Identity
- -