Msti028520.1
Basic Information
- Insect
- Megastigmus stigmatizans
- Gene Symbol
- -
- Assembly
- GCA_900490015.1
- Location
- UELV01178700.1:32602-34755[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.4 2.3e+03 -0.7 0.0 18 37 34 53 33 57 0.81 2 4 0.03 16 6.2 0.0 19 39 126 146 118 150 0.88 3 4 0.0074 4 8.1 0.0 21 42 224 245 222 248 0.88 4 4 0.011 5.6 7.7 0.0 12 37 306 330 304 335 0.82
Sequence Information
- Coding Sequence
- ATGGTTTCGAGGAGGCCATCTATGATTACAGAAGAGTTGAACAGACTATCCGTTAAAGaccaaaaattcatttataatgctGTGAATACTTACGTTTCTAGTGTGGATGAATTAGCCAcgaaatttaatgtattaagAGAGACCATTTTAGCAGTGTTGCACAAGAGAGAACTATTTGCTCTGGCACACACAGGTTTAATAAACCAAGAAGGAGCGACAGTAGAGCGAAATCAATGTTTAGAGATTCCATCAAGCAGCAACGTGAGGATGGTTACGAGGAGGCCATTACCATCTACGATTGCAGAAGAGATGAACAGACTATCCGATAAAGaccaaaaattcatttttaatgctGTGACTACTAACATTTCTGGTGTGGATGAATTagccataaaatttaatgtatcaagAGAGACCATTTTATCAGTGAACCGCACGGAAGAACTATATACTCTGGCACACATGGGTTTAATGAGCCAATTAGCAGCGGCAGTAGAGAGAAATGAATGTTTAGATTTGCCATCAAGCAGCAATGTGAGGATGGTTTCGAGGAGGCCATCACAAGGGCCATCATCTCCATCTATGATTCCAGAAGAGATGAACAGACTACCCGAGAAAGACCAAATCTTCATTTTCAATGCTATGGCTAGTGAAATATCTGATGTGGATGAATTGGCCACGAAATTTAATGTGTCAAGACAGACCATTTTAGAAGTGAACCGCACAAGAGAACAATTTTCTTTGGAGCACATAGGTTTAATAAACCATGTAGTAGCGGCAGTAGAGCGACATCAACGTAGAGATTTACTATCAAGCAACAATGCGAGGACTGTTTATAGAAGGCCATTATCATCTATGATTGAAGAAGAGATGAACAAACTATCCCAGAAAGTCCAAATCTACATTTTTAATGCTATTGCTACTAACATTTCTGTGGATGAATTGGCCACGAAATTTAATGTGTCAAGAGAGACCATTTTAGCAGTGAACCACAAAGGAAAACAATTTGCTCTGGAACATATAGCTTTCATAGACAAATTATTAGCGGCAATAGAGCTAAATCCTCCGCCAAACCTCCCAGAAAATGGAGTAGAGACTCTGATAAGTATCAGGAATCAGatgaagaaaatatattttcctaatgatGATGACAAATAA
- Protein Sequence
- MVSRRPSMITEELNRLSVKDQKFIYNAVNTYVSSVDELATKFNVLRETILAVLHKRELFALAHTGLINQEGATVERNQCLEIPSSSNVRMVTRRPLPSTIAEEMNRLSDKDQKFIFNAVTTNISGVDELAIKFNVSRETILSVNRTEELYTLAHMGLMSQLAAAVERNECLDLPSSSNVRMVSRRPSQGPSSPSMIPEEMNRLPEKDQIFIFNAMASEISDVDELATKFNVSRQTILEVNRTREQFSLEHIGLINHVVAAVERHQRRDLLSSNNARTVYRRPLSSMIEEEMNKLSQKVQIYIFNAIATNISVDELATKFNVSRETILAVNHKGKQFALEHIAFIDKLLAAIELNPPPNLPENGVETLISIRNQMKKIYFPNDDDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -