Mdor001617.1
Basic Information
- Insect
- Megastigmus dorsalis
- Gene Symbol
- -
- Assembly
- GCA_900490025.1
- Location
- UELU01145722.1:137746-138861[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2e-05 0.0024 19.0 2.3 2 23 77 98 76 98 0.97 2 9 8.8e-06 0.0011 20.1 2.0 1 23 104 127 104 127 0.98 3 9 0.86 1.1e+02 4.4 2.6 1 23 134 157 134 157 0.92 4 9 1.7 2.1e+02 3.4 7.1 1 23 163 185 163 185 0.97 5 9 6e-05 0.0074 17.4 0.5 2 23 191 213 191 213 0.94 6 9 0.00012 0.015 16.5 3.7 1 23 220 242 220 242 0.98 7 9 0.00013 0.016 16.4 3.6 1 23 246 268 246 268 0.97 8 9 3.6e-05 0.0044 18.2 0.1 1 23 274 296 274 296 0.97 9 9 8e-06 0.00099 20.2 1.0 1 23 302 325 302 325 0.97
Sequence Information
- Coding Sequence
- ATGACCACCGAAACAAGAAGCCGAAAAAAAGTATCAACAAacactgagaaaaatgaaaCTATCGATAACGAGCAGGAAAATCATGTAGAGACGCTCTCTAAATCGATTGAAAGCATCGTAAAATCCGAAAACAACATTCCTCCAGATTTAGGCTCCGATGTTGTTAAAAAGACAACGAAGAAGCGCGCAACAGCTAGTGATAAGAGAAACATTCCAAATTATAAGCTCAAATGTGAGATGTGTCCAGCCACTTTTTATCATCGAGGTCATCTGAACAGCCACATGATCAGTCATATGAAATCCACGCCCTATACATGTGATAAATGTTCAAAACCATTCAAATCGACCATTACTTTATCTAAACATATGAAAATATTCCATGACAATTCGGTTAAGTTGCATTCGTGCAACTTGTGCGAATTCAAATCGCCCTTGATTAGCTGTTTGAAACGGCACCAAATTGCAATGCACACCGaggattacaatttttcttgcGAACTGTGCAAAAGACAATTCAAATGCAAGTCCAGCTATAATTTTCACATGAAAAATCACGAATTAGGCCCCCGCGTTTGTGACGCGTGTGGAAAGACCTATTCGACTAACTCGGCCTTGTACTCGCACAAGCGCGAGAAGCACACgacgaaattgaaaaatttcaagtgCAATACTTGCAATCGACGATTCATGAGCCAGAAAAACTTGGACCTTCACAGTCGACGACACAGTATTAAATACGTTTGCGAAGACTGTGGCAAACAGTTCAAATCGAAATTCGCTCTGACATGTCATATCCACGTCCATTACAGAAACAAATCCTTCGCGTGCCCGATTTGTAATAAATCCTTCACCTTGGTAGGTTCGGTAAAGGTTCACCTGCTTACTCATCTAGGTGAACGTCCTTACTCTTGTGATATTTGTGGTAAGAATTTTACGCAAAGGTCCCCGATGATGCTGCATCGGAAAAAACTGCATCCCGGCACTTCCTATCCGCCACCTCCACCGATTAAGATTGTCAATCTTCTGCAAGGCATCGAGAACAAGATTGTTGCGAAAAAACCCATGAGAAAGATTATTAGACTTACTAAAGAAATTAAAGCCGATCCCGAACAATAA
- Protein Sequence
- MTTETRSRKKVSTNTEKNETIDNEQENHVETLSKSIESIVKSENNIPPDLGSDVVKKTTKKRATASDKRNIPNYKLKCEMCPATFYHRGHLNSHMISHMKSTPYTCDKCSKPFKSTITLSKHMKIFHDNSVKLHSCNLCEFKSPLISCLKRHQIAMHTEDYNFSCELCKRQFKCKSSYNFHMKNHELGPRVCDACGKTYSTNSALYSHKREKHTTKLKNFKCNTCNRRFMSQKNLDLHSRRHSIKYVCEDCGKQFKSKFALTCHIHVHYRNKSFACPICNKSFTLVGSVKVHLLTHLGERPYSCDICGKNFTQRSPMMLHRKKLHPGTSYPPPPPIKIVNLLQGIENKIVAKKPMRKIIRLTKEIKADPEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00969879;
- 90% Identity
- iTF_00969879;
- 80% Identity
- -