Basic Information

Insect: Megastigmus dorsalis
Gene Symbol: Clamp
Assembly: GCA_900490025.1
Location: UELU01121709.1:5111-15113[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.5e-05 0.0018 19.4 2.4 1 23 152 174 152 174 0.98

2 8 0.00028 0.035 15.3 0.4 1 23 206 229 206 229 0.93

3 8 8.1e-05 0.01 17.0 2.6 1 23 328 350 328 350 0.97

4 8 1.1e-05 0.0013 19.8 0.1 1 23 356 378 356 378 0.98

5 8 4.9e-06 0.0006 20.9 4.4 1 23 384 406 384 406 0.98

6 8 4.1e-07 5.1e-05 24.2 1.9 1 23 412 434 412 434 0.99

7 8 4.3e-06 0.00053 21.1 1.0 1 23 440 462 440 462 0.98

8 8 4.1e-05 0.0051 18.0 0.6 1 23 468 490 468 490 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.5e-05	0.0018	19.4	2.4	1	23	152	174	152	174	0.98
2	8	0.00028	0.035	15.3	0.4	1	23	206	229	206	229	0.93
3	8	8.1e-05	0.01	17.0	2.6	1	23	328	350	328	350	0.97
4	8	1.1e-05	0.0013	19.8	0.1	1	23	356	378	356	378	0.98
5	8	4.9e-06	0.0006	20.9	4.4	1	23	384	406	384	406	0.98
6	8	4.1e-07	5.1e-05	24.2	1.9	1	23	412	434	412	434	0.99
7	8	4.3e-06	0.00053	21.1	1.0	1	23	440	462	440	462	0.98
8	8	4.1e-05	0.0051	18.0	0.6	1	23	468	490	468	490	0.97

Sequence Information

Coding Sequence: ATGGCTCTAGAATCAAATAGTAACAATGTGGGCCAACAGATTCAGACACCAGTGAAGTGTTCCATGTTCACACAAACAGAGTTAAGCAACAACTTCACACAGACTGAGCAAAGCAACTCCAGCTACGCTGATCAGCGGCAGcCACAAGCAGCAACAATGTTTGACCCTCAGCAAATCCAGCAACAGCAGGCTGCACAAGGCCAGCAGTCTCAGCAGCAGCAAGCCCAACAGATGTATGTCACAGAGAAGAAGGAGGATAAATCTGGTCAACAAACGGCTACCACAGAATTCCCCTTTTACTATAATGTTAACATGCTGCAAAAGGTGCAAGCCAATGCAGTAGGCACCATTGGTGCCATCACTACTGATGATAAGGGCTGCTATCGGTTTGACGTTCAACCTGTAGGCTACAATACTCTCATCAATCAGATGAACTTAGCCACTAATACGACATTTAAATGCGATATCTGCGGGCTCGTGTTTGGTCATATGAGTCTCTTAAATCATCACAAACGCATTCATAATTCGACACCAAGCAACTTACAGCAGCAACCCCAGCAAGTTGTGGTGCAGACGCCTACAACAGTCACGGTGGCAACCACTCCAGAAAGACCATATACGTGTGATGTATGTGGTGCTTGTTTTGCTTTGCCTGGAGAATTGAAGAGTCACAAAACTAACATGCATCAGAAGCCAAAAGTGCAAATTTGCGAGGATTGCGGAAGCGAGGATCCCTGTGAACACCATCCTACAAAGATTAAGAAGAcAATTAAACCTGGTCATCACCCAGTAAAGCGGCGTGGTGTCACCAGCGTTACCAAGTGCCACAAGTGTAATGGCACAGGCATCATTTTTATTgGTAAACACAACGAAAAACTAGATTCCGGAATCAGTTCCCTCGCGAAGTGTAGCGGCTGCAAGGCGACAGGCCGAATCATCATAGGAAGCGGAAAAGCAAACAGTCAGCAACAGGAGAAGCCGTTTCATTGTAACGTTTGTGACGGCACTTTTTCAAGATATTCCTCTCTGTGGTCTCACAAGAGACTACACTCCGGCGACAAACCGTTCAAATGTGAAGTCTGCGGCTTAGCTTTTGCTAAGGCGGCGTATCTAAAAAATCATGGCCGTGTGCACACGGGCGAGAAGCCATTTAAGTGCAGCCATTGCGGTATGCAGTTCTCGCAGTCTCCGCATCTGAAGAATCATGAACGCATCCACTCCGGCGAGCGACCGTACCAGTGCGAGGTTTGCGAGAAAACGTTTGCCAGGCACTCGACTCTCTGGAATCACCGTCGGATTCACACCGGTGAGAAGCCGTACCGATGTAACATCTGTGGCTCGGCTTTTAATCAAGCAACACACCTCAAGAATCACGCCAAGGTCCATACTGGAGAGAAACCGCACAGATGCGACATTTGCGAGATCGGCTTCTCGGACCGGTTCGCCCTCAAGCGCCATCGAGCGATCCATGAAAAGTACGGCCAGACCGCCGCCCGCAACAGCAATGCCAACCAGAGCAACTCCCAGGCCAACACGAGCTCCCAGCAATCGCAGCAACAGCAGGTGGTGGTGGTGAACGCGTCGACGCCGGTGACGGTTAGCCAGGGTCAGGGACAGGCCGTCATGCTCGAGGAGGTGTACAAGGGCCAGGTGGCCTTCCTCGAGCCCAAATGA
Protein Sequence: MALESNSNNVGQQIQTPVKCSMFTQTELSNNFTQTEQSNSSYADQRQPQAATMFDPQQIQQQQAAQGQQSQQQQAQQMYVTEKKEDKSGQQTATTEFPFYYNVNMLQKVQANAVGTIGAITTDDKGCYRFDVQPVGYNTLINQMNLATNTTFKCDICGLVFGHMSLLNHHKRIHNSTPSNLQQQPQQVVVQTPTTVTVATTPERPYTCDVCGACFALPGELKSHKTNMHQKPKVQICEDCGSEDPCEHHPTKIKKTIKPGHHPVKRRGVTSVTKCHKCNGTGIIFIGKHNEKLDSGISSLAKCSGCKATGRIIIGSGKANSQQQEKPFHCNVCDGTFSRYSSLWSHKRLHSGDKPFKCEVCGLAFAKAAYLKNHGRVHTGEKPFKCSHCGMQFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCNICGSAFNQATHLKNHAKVHTGEKPHRCDICEIGFSDRFALKRHRAIHEKYGQTAARNSNANQSNSQANTSSQQSQQQQVVVVNASTPVTVSQGQGQAVMLEEVYKGQVAFLEPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00292456;
90% Identity: iTF_01524203;
80% Identity: -