Mdor001624.1
Basic Information
- Insect
- Megastigmus dorsalis
- Gene Symbol
- -
- Assembly
- GCA_900490025.1
- Location
- UELU01145722.1:168027-174298[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0029 0.36 12.2 0.2 1 23 67 89 67 89 0.97 2 19 0.00012 0.015 16.5 1.0 1 23 91 114 91 114 0.92 3 19 2.8 3.5e+02 2.7 2.9 1 23 120 143 120 143 0.90 4 19 0.00017 0.021 16.1 0.3 1 23 149 172 149 172 0.96 5 19 2.4e-05 0.003 18.7 0.5 2 23 179 201 179 201 0.93 6 19 0.00069 0.086 14.1 0.2 1 23 206 228 206 228 0.96 7 19 8.1e-08 1e-05 26.5 0.3 2 23 235 256 234 256 0.97 8 19 0.00013 0.016 16.4 2.9 1 23 262 284 262 284 0.98 9 19 1.7e-07 2.2e-05 25.4 0.5 1 23 290 312 290 312 0.98 10 19 6.4 7.9e+02 1.6 2.6 1 23 381 404 381 404 0.94 11 19 0.0046 0.57 11.5 1.9 1 23 410 432 410 432 0.97 12 19 6.8e-06 0.00084 20.4 1.6 1 23 438 460 438 460 0.99 13 19 0.0066 0.82 11.0 0.4 1 23 466 488 466 488 0.97 14 19 2.8e-05 0.0034 18.5 5.0 1 23 495 518 495 518 0.95 15 19 4.9e-05 0.006 17.7 3.3 1 23 530 553 530 553 0.97 16 19 0.0017 0.21 12.9 2.0 3 23 565 585 563 585 0.97 17 19 1.3e-08 1.5e-06 29.0 0.6 3 23 593 613 592 613 0.98 18 19 8.8e-06 0.0011 20.1 0.1 1 23 619 641 619 641 0.98 19 19 1.5e-06 0.00019 22.5 1.8 1 23 647 669 647 670 0.96
Sequence Information
- Coding Sequence
- ATGAACTCCCGCAGCCAATCAGCCAACCAATCCTCCAGTCCCGAAAAACCATCGAGACCCTCCACcacacaacaacaacaacaacagcagcagcgtcgTCGCAAGCTCAACGTGCCCCTGAAAAAGCTCAAGATAGACGAGAGCACGCAAACCGGCCAGAGCGACAACTCGACCGTCAAAGCCGAACAGCTGGAGCAGCATCAGTGCGTCAAGTGCGAGAAGGTGTTCGGCAGCGGTCCCGAGCTCCAGGAGCACGCCAAGATACACGCCTATCCCTGCGACCACTGCGACGCGTCGTTCCGCCTGCGCAAACAGCTGCGCAAACACGCGTCCGAGGTGCACAAGTCCCTGCCCAAGTACGTCTGCAGCGAGTGCGAGAGCATATTCAAGTGCAGACAATCGCTGCGCGAGCACTTTGTCCGCAAGCACACCGAGGGCTTTCGCTTCGTGTGCGCCGCCTGCGGCAAGAAGTTCAAGATGAAGAGCGACCTGTACATGCACGTACAGAGCATACACAGCGACGAGCGGGAGGCCGTCTGCGACGTATGCGGCAAGACCTATCGCAACGCCTTCGCCCTCAAGAAGCACCTGGCCCACGCCCACAATCAGCGTCCCTACGCCTGCGACATATGCAAGCGCAAGCTCGCAACGAAGGAGTCGCTCGAGCAGCACGCCCAGCTTCATCTGAAGAAGGAGCGGACGGTCTGTCAGGTGTGCGGCAAGACCTTCAGCGGGAACGACGCCCTCAAGAAGCACATGAGGATACACACGGGTGTGAGGCCGTTCCCCTGCAAGGTATGCGGCAAGGCCTTCAGACGGCAGAACACCCACAAGCAGCATCTGCTCACGCACACGGGTGTACGACCCTACGTCTGCGACATATGCGGCAAGAGCTTTACGCAGAAGCCGGGACTGATCACGCACAGGAAGAAGCATCCGGGACCTTTGCCGCCTCTGCCCGCCGTCTCCATCGACTACGTCATCGCGGATCTCATGCAGAAGACCGACGCCAAGAACACTCGGATGCTGGATGCGTCGTCCGAGTCAGACGCCCTATTCTATCGGGACCTGGAAAACCCATCGTCGCCCGGTTATTCGTCCATCAGCAACGAGGATCGCCCCAAGAGATTTCGCCTCCAGCACTACTGCCTCGTCTGCCTGATGGGCTTCACCTGCCAGTCGAAACTCGGCGAGCACATGCTCCAGAGCCACAACATCGAGCGGCCCTTCAACTGCGACATCTGCGAGGCCACCTTCCGCAGCCACCTCAGCGTCAGCCGCCACAAGCGGATCCACCAGGCCGAGAAGAAGTACGTCTGCGAGATGTGCGGCTACTCGAGCCACCAGAAATCAAATCTCGTGGTGCACCAGCGCAGACACGCCCAGCACTACACCTACCGTTGCGACGTATGCGGCGCGGGTTTCATGCAGAGGACCAAGTACCTCGAGCACAGGTCCCTGCACGAGGGCAAGGACGCCACCCACGAGTGCAAGATCTGCACCAAGGTCTTCAACTACAAGAGGAATCTGAAGGCCCACCTGAAGGCCTGCCACCCGGAGACCTTTGGGAATTATCAGGGCCCGATGTTCGAGTGCAGCTACTGTACGCGCTCCTTCTCCAAGGATCGATATCTGAAGCGACACCTGAGCACCAGTCACGCGAGCCTCGTCGAGCCCTCGGTCAAGTGTCTCTGCGATCTGTGCGGCGCCCAGCTCTCGTCCAAGACCGCCCTCGCCCATCACATGAGGAGCCATTGGGGCCTGAAGGTCGCCGACTGCGACATATGCGGCAAGAGCTTCACCAAGTGGGAGAATCTCAAGGTCCATCAGCGAACCCACACGGGCGAGAAGCCCTACGTGTGCGGTGTGTGCGGCAAGGGATTCGCCCAGAGGACCACTTTGGTCTATCACACGCGGGTCCACACGGGCGAGAGGCCCTATCGGTGTACGGAGTGCGAGAAAACCTACGTGTCGGCCTCGCTCTTGAGAAAGCACGTCAAGGTACATCACGCGAAGCTCCAGGATAGAGAATGA
- Protein Sequence
- MNSRSQSANQSSSPEKPSRPSTTQQQQQQQQRRRKLNVPLKKLKIDESTQTGQSDNSTVKAEQLEQHQCVKCEKVFGSGPELQEHAKIHAYPCDHCDASFRLRKQLRKHASEVHKSLPKYVCSECESIFKCRQSLREHFVRKHTEGFRFVCAACGKKFKMKSDLYMHVQSIHSDEREAVCDVCGKTYRNAFALKKHLAHAHNQRPYACDICKRKLATKESLEQHAQLHLKKERTVCQVCGKTFSGNDALKKHMRIHTGVRPFPCKVCGKAFRRQNTHKQHLLTHTGVRPYVCDICGKSFTQKPGLITHRKKHPGPLPPLPAVSIDYVIADLMQKTDAKNTRMLDASSESDALFYRDLENPSSPGYSSISNEDRPKRFRLQHYCLVCLMGFTCQSKLGEHMLQSHNIERPFNCDICEATFRSHLSVSRHKRIHQAEKKYVCEMCGYSSHQKSNLVVHQRRHAQHYTYRCDVCGAGFMQRTKYLEHRSLHEGKDATHECKICTKVFNYKRNLKAHLKACHPETFGNYQGPMFECSYCTRSFSKDRYLKRHLSTSHASLVEPSVKCLCDLCGAQLSSKTALAHHMRSHWGLKVADCDICGKSFTKWENLKVHQRTHTGEKPYVCGVCGKGFAQRTTLVYHTRVHTGERPYRCTECEKTYVSASLLRKHVKVHHAKLQDRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -