Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.0025 2.1 8.9 0.0 18 42 36 60 28 63 0.88

2 3 0.017 15 6.2 0.0 21 43 130 152 128 154 0.87

3 3 0.0026 2.2 8.8 0.0 11 37 211 236 210 243 0.82

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.0025	2.1	8.9	18	42	36	60	28	63	0.88
2	3	0.017	15	6.2	21	43	130	152	128	154	0.87
3	3	0.0026	2.2	8.8	11	37	211	236	210	243	0.82

Coding Sequence: ATGGTTTCGACGAGGCCATTACCATCTATGATTGCAGAAGAGATGAACAAACTATCCGATAAAGACCAAATCTTCATTTTTAATGCTGTAACTACTAACGTTTCTAGTGTGGATGAATTAGCCACGAAATTTAATGTATCAAGAGAGACCATTTTAGCAGTGAACCGCAAGGGAGAACACTTTACTCGGGCACACTTATGTTTAATAAACCAAGTCGTAGCGGCAGTAGAGCGAAATCAACGTATAGATTTGCCATCAAGCAGCAATGCGGGGATGCTTTCGACGAGGCCATTACCATCTATGATTGCAGAAGAGATGGACAAACTAACCGAGAAAGACCAAAACTTCATTTATAATGCTGTGGCTTGTAAAATTTCTGATGTGGATGAATTGGCCACGAAATTTAATGTGTCGAGAGAGACCATTTTAGCAGTGAACCACAGGGGAGAACAATATACTCTTGAACACATAGGTGTAATAAACCAAGTAGTAGCGGCAGTAGAGCGACATCAACGTATAGATTTGCCATTAAGCAATAATGCGAGGATTGTTTCGAGGAGGCCATTACCATCTATGATTGTAGAAGAGATGAAGAAACTACCCGAGAAAGACCAAATCTACATTTTTAATGCTATTGCTACTGACATTTCTGTGGATGAATTGGCCACGAAATTTAATGTGTCAAGAGAGACCATTTTAGCAGTGAACCACAAGGGAGAACAAATTGCTCAGGAACATATAgctttaataaacaaaatattagcGGCAGTAGAGCGAAATCCTCCGCCAGACCTCCCAGAAAATGGAGTAGAGACTATGATAAGTATCAGGGATCAgatgaagaaaatatattttcctaaGGATGATGATAACTAA
Protein Sequence: MVSTRPLPSMIAEEMNKLSDKDQIFIFNAVTTNVSSVDELATKFNVSRETILAVNRKGEHFTRAHLCLINQVVAAVERNQRIDLPSSSNAGMLSTRPLPSMIAEEMDKLTEKDQNFIYNAVACKISDVDELATKFNVSRETILAVNHRGEQYTLEHIGVINQVVAAVERHQRIDLPLSNNARIVSRRPLPSMIVEEMKKLPEKDQIYIFNAIATDISVDELATKFNVSRETILAVNHKGEQIAQEHIALINKILAAVERNPPPDLPENGVETMISIRDQMKKIYFPKDDDN

Sequence clustering based on sequence similarity using MMseqs2