Basic Information

Gene Symbol
stc
Assembly
GCA_936440415.1
Location
CAKZFH010000325.1:48006-59484[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 1 1.9e+04 -4.3 1.6 15 19 505 509 504 509 0.81
2 13 0.033 6.3e+02 0.6 1.7 2 10 537 545 537 545 0.92
3 13 1.8e-05 0.35 11.0 18.1 4 19 553 568 551 568 0.93
4 13 1.4e-08 0.00026 21.0 12.7 1 18 604 621 604 622 0.97
5 13 5.5e-06 0.11 12.7 9.7 1 18 663 680 663 681 0.97
6 13 1.9e-06 0.036 14.2 12.0 1 19 722 744 722 744 0.87
7 13 1 1.9e+04 -5.3 2.2 6 10 774 778 774 778 0.94
8 13 0.0074 1.4e+02 2.7 7.3 1 11 784 794 784 795 0.93
9 13 0.015 2.9e+02 1.7 0.5 4 10 799 805 798 805 0.93
10 13 7.2e-06 0.14 12.3 13.9 3 19 813 829 811 829 0.92
11 13 0.018 3.5e+02 1.4 17.2 1 18 868 884 868 885 0.81
12 13 1.3e-07 0.0024 17.9 14.3 1 17 921 939 921 945 0.85
13 13 0.00012 2.3 8.4 11.0 4 19 953 971 951 971 0.89

Sequence Information

Coding Sequence
ATGTCTCAGTGGAACAACGCATACGCTTATAACAACCAGTACCAAGTTTATAACGACCTCAACGCCCAATATTTAAACCAACAACAGCACTTTCCCAACAGAGATTCATCAAATCAATATGTGAGTTTCAATGAGTTTTTATCACAGATGCAAACAAACCCAGCCGCTAATGCTACTAGCTATCCTAATGTGCAGTACGAGAACTACCCTACCAGAGACTATAACTATCAAAATGTCCCACCAGCACCTCAGAATCCACAGCTAGACAATTATGGCTATGCAACCTCATCAGGTTTACCCAATGGTGCAGAATATCAAATGAGCATCCAAAATCAATACAACCCAGTGTTACCTGATCCTAATTCATACTCTAGTGAAGTTATACTCAACTCTAATCTCACTCCCACAGCCACTGAGTTTGTACCAAAAAGTAGTTTGCAGCCTTCTTCGAGTAGCCAGAACATTCCTGAATTTACTTCTTTAAGCACTGAAAACGAACCCAGGAGTAACTATAGTGCCCAGAATAATACTAAAAATCAATATAGTAGTGATACTAGAAATAATTTCACTAATAATTCTGCTATGAATGAACCTAGAAACTATAGCAGTGCTTCATCAGATACTAATTGGAGAGAAAGACCACATAGTTCCCAACAAAGTGAACCTAATTATAAAGAACCAAACAGACAGAGAAACCAAGAACCTAGCCGCAATCGTGATTCTAAGTATCGTAATAATGACTCAAGTAGCCGAAATTATGAGTCTAATCGCAACCAAGAATCAAATGGCCGTCAATATGAGTCTAATTACCGCAATCAAGAATCAAATAGACAATATGATAATCAAGATTCCAGTGCTAGACAAAATGAATCAAATTCCTATCAGGAATCAAATGGTCGACAGTATGATACATACAACCGCAGCCAAGAATCGAGTAGTCGCTATGATAGTCGCAGTTATGAAACTGCTAACAAGAGGGGCCAAGGTAAACTAAATTATAATAAAGCTAATAAAAATAGAGATGCAGATGCTCGTACATTTTACAACAGTTCTATTAATAAAGATAGCCAGGATGTCAGGAATGGAAAGTTAGAAAGTTCTGGAAGGGGCAGAGGTTGGGCTGGAAGCCAGCGTTTGAAAGCTATGGAACGTAACAGTACAGAAGATGAACAGTATGCTAACAACTACACTCATGGTAGAGCAGAGCGAGCAGAGCGAGAGGAGAAAAGGGAAGAAAGAGATAGAGGGAGGATCATGAAAACCGAAAGTGTTGGCAGTCCAAGCAGGTCTCGGACTAAACAAAATTATACAAATGATCAAGTAAATACAGACCTAACACAAAGGGAGCGTCTTACAGAACAGCTAGACAGAGGCACACTAGAATGCCTGGTGTGCTGTGAGCGAGTAAAGCAAATAGACCCAGTGTGGTCATGCTCAAATTGCTACCATGTATTACATTTGCGGTGCATCCGCAAGTGGGCTATGAGCAGTATGGTGGAGGGTAAATGGCGCTGTCCTGCTTGCCAAAACACGAACGAAGCTATCCCAACCGAGTACCGGTGCATGTGTGGAGCTATCAAGAGTCCGGAGTACCAGCGCGGTGCGGCAGGAGCTCACACCTGTGGCAAGTCGTGTCGCAGAGTGCGCTCCTGTCCACACCCTTGCACGTTGCTGTGCCACCCTGGGCCCTGTCCTCCGTGCCAGGCTACTATTACTAAAAAATGTGGGTGTGGTGCAGAATCGCGTTCAGTGTTATGTAGCAGCAAATTGCCACAGATTTGTGGCCGTCAGTGTGGACGTACCCTACTGTGTGGCCAACATACTTGTGCTAAAGACTGCCACGAGGGACCGTGTGATATTTGTGAAGAGACTATCACTCAAGTGTGCTACTGCCCCGCGGCGAAGAGCCGGACAGTGTCGTGCTCGTCCGAGTCGGGCGGTGTGAGCGGCTGGTCGTGCGGCTCGTCGTGCGGCCGCGTGCTGTCGTGCGGCGCGCACGTGTGCCGCGCGCTGTGCCACGCGCCGCCCTGCGCCCCGTGCGACAGGGACCCCACTACACTCGCCACGTGCCCCTGTGGACATACCAAGCTAGACCCAGACTCGCGCAAATCGTGTACGGACCCAGTGCCTCTGTGTGGTAATATCTGCGCTAAACCATTGCCGTGCGGACCTGCGGGTGATAAGCACTTCTGCAAACTAAGCTGCCATGAAGGTCCTTGTCCCGTATGTCCCGATAAGACGGTACTCCAGTGTCGCTGTGGGCATTCGAGTCGCGAAGTGCCTTGCTCAGACTTGCCCGAAATGTATAATAATGTCTTCTGTCAAAAGAAATGCAATAAGAAGCTGTCGTGCGGGCGCCACCGCTGCCGCACGGCGTGCTGCGCGAGCGCATCGCACCGGTGCGCGGCGCCGTGCGGCCGCTCGCTGGCCTGCCAGGCGCATCGCTGCGACGAGTTCTGTCACACGGGGCACTGCGCGCCCTGCCCACGACTCAGTTTTGAAGAGCTAACGTGCGAGTGTGGCGCCGAAGTGCTACTACCGCCCATCCGCTGCGGCACGCGTCCGCCCGCGTGCTCGGCGCCATGTCCGCGGTCGCGCGCGTGCGGTCACCCGCCGCACCACTCGTGCCACTCGGGCGACTGTCCGCCCTGCGTCGTGCTCACCACCAAGCGATGTCACGGGGACCACGAGGAAAGAAAAACAATTCCATGTTCTCAAGAGGAGTTCTCGTGCGGTTTGCCGTGCGGCAAGCCACTACCCTGTGGCAAGCACACTTGCGTCAAGACATGCCATAAAGGTCCCTGCGATACTGGCAAATGCACCCAGCCGTGCGCCGAGAAGCGCGAGGCGTGCGCGCACCCATGCGGCGCGGCGTGCCACTCGGGGGCGTGCCCCAGTGCGGCGCCGTGCCGCGCGGTGGTGCGCGCCACGTGCCGCTGCAGCAGACGCGCCGCCGATAGGTACTGCTCCGACAACGCCAGGGACTACGCCAAGATGATGAGTGCGCTAGCGGCTACAAAAATGGGAGAGGGTGGTTCAGTTGATCTCTCCGAAGTGCAGCGACCCGGCAACATGCTCAAAACGCTGGAGTGTGACGACGAATGTCGTGTAGAAGCTCGCACCCGTCAGTTAGCACTAGCGCTACAGATCCGCAACCCCGACGTATCGGCCAAGCTCGCGCCGCGGTACAGTGAACACGTCAGGACCACCGCCACCAAGGAGCCTTCTTTCGCGCAGCAGATACATGACAAACTCACCGAACTCGTGCAACTCGCTAAAAAGTCGAAGCAGAAAACCCGCGCCCACTCGTTCCCATCAATGAACTGGCAGAAGCGTCAATTCATTCACGAGCTGTGCGAACACTTCGGCTGCGAGAGCGTTGCGTACGATGCTGAGCCTAATAGAAACGTCGTCGCTACCGCTGATAAGGAGAAGTCGTGGCTGCCGGCGATGAGCGTGCTGGAAGTGTTAGCGCGCGAGGCGGGCAAGCGTCGCGTGCCGCCGCCCGTGCTGCGCGCCGCCAGTGCGGCTGCACCGGCGCCTGCGCACCACCACGCCACTGCCTCCTCACACCCCAGCGTCAAGTATGTATCTACTAGCTATATCTGCCGGCGATGA
Protein Sequence
MSQWNNAYAYNNQYQVYNDLNAQYLNQQQHFPNRDSSNQYVSFNEFLSQMQTNPAANATSYPNVQYENYPTRDYNYQNVPPAPQNPQLDNYGYATSSGLPNGAEYQMSIQNQYNPVLPDPNSYSSEVILNSNLTPTATEFVPKSSLQPSSSSQNIPEFTSLSTENEPRSNYSAQNNTKNQYSSDTRNNFTNNSAMNEPRNYSSASSDTNWRERPHSSQQSEPNYKEPNRQRNQEPSRNRDSKYRNNDSSSRNYESNRNQESNGRQYESNYRNQESNRQYDNQDSSARQNESNSYQESNGRQYDTYNRSQESSSRYDSRSYETANKRGQGKLNYNKANKNRDADARTFYNSSINKDSQDVRNGKLESSGRGRGWAGSQRLKAMERNSTEDEQYANNYTHGRAERAEREEKREERDRGRIMKTESVGSPSRSRTKQNYTNDQVNTDLTQRERLTEQLDRGTLECLVCCERVKQIDPVWSCSNCYHVLHLRCIRKWAMSSMVEGKWRCPACQNTNEAIPTEYRCMCGAIKSPEYQRGAAGAHTCGKSCRRVRSCPHPCTLLCHPGPCPPCQATITKKCGCGAESRSVLCSSKLPQICGRQCGRTLLCGQHTCAKDCHEGPCDICEETITQVCYCPAAKSRTVSCSSESGGVSGWSCGSSCGRVLSCGAHVCRALCHAPPCAPCDRDPTTLATCPCGHTKLDPDSRKSCTDPVPLCGNICAKPLPCGPAGDKHFCKLSCHEGPCPVCPDKTVLQCRCGHSSREVPCSDLPEMYNNVFCQKKCNKKLSCGRHRCRTACCASASHRCAAPCGRSLACQAHRCDEFCHTGHCAPCPRLSFEELTCECGAEVLLPPIRCGTRPPACSAPCPRSRACGHPPHHSCHSGDCPPCVVLTTKRCHGDHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCVKTCHKGPCDTGKCTQPCAEKREACAHPCGAACHSGACPSAAPCRAVVRATCRCSRRAADRYCSDNARDYAKMMSALAATKMGEGGSVDLSEVQRPGNMLKTLECDDECRVEARTRQLALALQIRNPDVSAKLAPRYSEHVRTTATKEPSFAQQIHDKLTELVQLAKKSKQKTRAHSFPSMNWQKRQFIHELCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLAREAGKRRVPPPVLRAASAAAPAPAHHHATASSHPSVKYVSTSYICRR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-