Malb015215.1
Basic Information
- Insect
- Meganola albula
- Gene Symbol
- -
- Assembly
- GCA_936440415.1
- Location
- CAKZFH010000219.1:132584-144897[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.15 12 6.7 2.3 2 23 187 208 186 208 0.93 2 12 0.0022 0.17 12.5 3.2 1 23 245 268 245 268 0.96 3 12 4.3e-06 0.00033 21.0 1.5 1 23 270 292 270 292 0.97 4 12 0.11 8.3 7.2 0.3 1 23 301 323 301 323 0.95 5 12 0.99 77 4.1 0.5 1 23 328 350 328 350 0.95 6 12 0.27 21 5.9 3.9 1 19 409 427 409 431 0.87 7 12 0.00011 0.0085 16.6 1.0 1 23 437 459 437 460 0.95 8 12 0.015 1.1 9.9 2.0 1 23 470 493 470 493 0.96 9 12 9.9e-05 0.0077 16.7 0.1 2 23 499 523 498 523 0.94 10 12 0.4 31 5.4 0.3 3 23 583 604 581 604 0.92 11 12 0.00014 0.011 16.3 0.4 2 23 611 632 611 632 0.94 12 12 0.012 0.91 10.2 0.0 2 23 641 663 640 663 0.96
Sequence Information
- Coding Sequence
- ATGGCAGCCAAACCAGACATTACCAAATTTCACATCGGAAACCTGGACGGCACCAACTGGACTGACACTAATAAACCTGTGAAATCAAATCCTGTTGAAGGAAAATCTGAAATAGAAATAACTCTTCGAAGATCGCCAAATCTTTTTGCAAGGGAGGAGGATACTCAACCGATTCATGATGCAAGGGAGGAAGAAAATGAAAGTACAGATACATTTCAAGAGTGTATACCTCCTGAATCGTTTGCTGATACACCTGAGGCTGAAGTGGGTATCAGAAGTCCTTCAGAAACACAAGATGAGCGAGTTGAAGTTGATGACCAAATATTATCAGAGCAGTTGGAAGATGAAATAATGCAAGATAGTGAAATTGAGGATCaaggaagaatgactcttagagatagatctacattgcgaccacctgcaaaacttggtgactacgttatgacttctCACCTAGCAATGGCTTCACCAAATAATACTAACATAGATGAAGATTGGAGTGGAGTAACTCCTTCAAAACCCCGCAAGCCAACAGCTATAGACACCGTTGGTGGGATATATTGCAGTATTTGTCAGTGTATCTTCAACAATAAGCAACAGTATGATGAGCACTACTACCAACACAATGTTACCGGCGAGTTTGTGTATACCTGTGTAGTGTGTCGCAAGGAAATTGTTGGTTACCCAGCATTCAGGAACCATTGCTATGGTGCACATGTTGTTAGGGAAAAATTCAAATGTGTACATTGCTCCAAAAAATTCTCAAAACTTACTGTCCTCAATACCCATATTGATTCTACCCACACTTTTAAGTGTACAGACTGCAAAGAAACGTTTTCCTCAAAAAAAGAATTACGAACTCATGAAATTATTCACAAAAATGATAAACACAAGCCTCCATACCCATGCAAAGTATGTGGGGAGTCTATCGACAGCCTCGATACATGTGAGCTCCACATGGACCGGCACTGCCTCATGGAGTACCCCTGCAGCATCTGTGAACACATCGCCACCACACACCAGGACGCGGTACAACACCTTACCGTACACTTCGGTGACGTACTTAACGAACAAATCGAACTGACAGACTCCGAACTAAGTGAAGAAGGCTCCATCGCGACCCTCGGGGGTATTCTCTGCTGTTTTTGTGAAGAACTCTTCGAAAACAAACTCGAATTCGATGTACACTTTTCTGTCGAACACGGAGACCAAGATGTTATTTTTTACACATGCAATATTTGTGGAAAGGAATACGATAAATACCGCCAGTTCGGTTCCCATTGCTACAACCACGTCAGTAAAGATAAATTCGCATGCGTAGACTGTTCGAAGACGTTCGATCGCCTGTCCCTGCTGGTGCTGCACACCGAGACCCACCACTCCTCCCACTCCGAAGACGCGTGCACCTTCAGCTGCAGCGAGTGCGGGCACAAGTTCGGCTCCAGCCGCCGCGTCAAGGAACACTTCCGCATCGTGCACTCCTCCGACACGCTCCGGTGTCCCGACGACGGCTGCGACGAGGCGTTCTCGACGCTGCGGCAGCTGGTGCGGCACCGGCGCGCGGCGCACGCGGGCGGCGCGGCGTGCCGGCACTGCGCGCTGCGGCTGTCGGCGCGCGCGGCCGCGGCGCACGTGCGCGTGCACCGGCGCGCGCGCCCGGCCTGCCCCGTGTGCGCGCGCCGCGGGCCCGAGCGCCGCCACGCGCTGCGCCACGCCGCCGAGCACTTCGAGGCCGCGTGGCACCTGTGCCTCGTGTGCGGCCGCGGGTACCCGGCGCGCCACCGCCTGGCCGAGCACGTGCGCGCGGCGCACTCGGGCGCGCGCGCGCGCTCGTGCCCGCACTGCGGCAAGGCGTTCGGCTCGCGCGCGCGCCTCAAGCAGCACGTGGGCGTGCACGCGGCGGCGGCGGCGCGGCCCTGGCGCTGCGCGCTGTGCGCCAAGCCCTTCGCCGCGCGCCCCAACTGGGCCAAGCACCTGCGCACCGTGCACCGCCTGCGGCCCGGCGCCGCCCCCGCCCCGGCCCCGGCCCCCGCCCCGGCCCCGCCGTCCGAGCCGGACGACAGTGCGGTGGAGTCGATCGACGCGGCCGCCATCGCCAAAGACTGGCAGATCGTGTACGAGCGATCGATGGCGGAGGACGGAGTGCCGTACGCCGAAGTGCTCCCGCTGGACGGGGCGGTCGATTTCGAGATACCGGAATACCCCCAAGAACCGTACCCCCAACAGCCCCCGTACCCGGGCGCGGAGTGCGAGCCCACATTCTCGTGGCAGGAGCCGGGCGCGTGCTGCGTGCACGCGGGCGAGGCGTGCCTGCACTCGGTGGACCCGCGCCTCGCCTGCGCGCCCGCACTCACCGACACACGCACCGACACTCACACCGACACACATACCGACACATACACCGACACATATACCCACACATACACCGACACAAGCACCGACACGCACACTCGCACAGACCTCGTGCCCACCCTCTGGGACCCCCTCATCACCAAGGCCTACCACACCTTGAACGACAACGACTTCAACAGTCTTACCTTCACAGATTTGTTATGCTAA
- Protein Sequence
- MAAKPDITKFHIGNLDGTNWTDTNKPVKSNPVEGKSEIEITLRRSPNLFAREEDTQPIHDAREEENESTDTFQECIPPESFADTPEAEVGIRSPSETQDERVEVDDQILSEQLEDEIMQDSEIEDQGRMTLRDRSTLRPPAKLGDYVMTSHLAMASPNNTNIDEDWSGVTPSKPRKPTAIDTVGGIYCSICQCIFNNKQQYDEHYYQHNVTGEFVYTCVVCRKEIVGYPAFRNHCYGAHVVREKFKCVHCSKKFSKLTVLNTHIDSTHTFKCTDCKETFSSKKELRTHEIIHKNDKHKPPYPCKVCGESIDSLDTCELHMDRHCLMEYPCSICEHIATTHQDAVQHLTVHFGDVLNEQIELTDSELSEEGSIATLGGILCCFCEELFENKLEFDVHFSVEHGDQDVIFYTCNICGKEYDKYRQFGSHCYNHVSKDKFACVDCSKTFDRLSLLVLHTETHHSSHSEDACTFSCSECGHKFGSSRRVKEHFRIVHSSDTLRCPDDGCDEAFSTLRQLVRHRRAAHAGGAACRHCALRLSARAAAAHVRVHRRARPACPVCARRGPERRHALRHAAEHFEAAWHLCLVCGRGYPARHRLAEHVRAAHSGARARSCPHCGKAFGSRARLKQHVGVHAAAAARPWRCALCAKPFAARPNWAKHLRTVHRLRPGAAPAPAPAPAPAPPSEPDDSAVESIDAAAIAKDWQIVYERSMAEDGVPYAEVLPLDGAVDFEIPEYPQEPYPQQPPYPGAECEPTFSWQEPGACCVHAGEACLHSVDPRLACAPALTDTRTDTHTDTHTDTYTDTYTHTYTDTSTDTHTRTDLVPTLWDPLITKAYHTLNDNDFNSLTFTDLLC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -