Malb016530.1
Basic Information
- Insect
- Meganola albula
- Gene Symbol
- -
- Assembly
- GCA_936440415.1
- Location
- CAKZFH010000252.1:39615-41664[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.1 5.5e+02 1.5 0.1 3 17 74 88 73 89 0.88 2 12 0.00061 0.047 14.3 0.8 2 21 153 172 152 173 0.94 3 12 1.8 1.4e+02 3.3 1.1 3 23 181 201 180 202 0.91 4 12 0.029 2.2 9.0 0.7 1 23 206 229 206 229 0.95 5 12 0.00012 0.0092 16.5 1.2 2 23 235 256 234 256 0.95 6 12 0.0046 0.35 11.5 2.8 2 21 260 279 259 280 0.93 7 12 0.0027 0.21 12.2 1.5 2 23 322 344 321 344 0.94 8 12 0.26 20 6.0 0.6 5 23 354 371 351 371 0.90 9 12 0.01 0.78 10.4 0.7 1 23 377 399 377 399 0.98 10 12 0.0025 0.2 12.3 3.0 1 23 405 428 405 428 0.97 11 12 0.00047 0.036 14.6 0.8 1 23 436 459 436 459 0.95 12 12 0.0016 0.12 12.9 8.3 1 23 469 491 469 491 0.98
Sequence Information
- Coding Sequence
- ATGAGCCGGCAAGTTGATATTAAAGCACTAGTTTCGCATATTGTGCATGGAGACGGTGTTGATAAATGCCGAATATGTATGGGCGAGACCGGAGAAGGCCAGATGCACCTTGAAGATACCGTTATGATGGACGGAGACAAGCCTGTGACCCTTGCAGAGCTGTTAGAGGTCATCACAGGTGTTCAGGTGCTGGTGGAAGACAACCTGCCTCCAGGACTCTGCTCCACCTGCTCAAAGTCTGCTATAGACGCTGCAAACTTCAGAACGTTAACCCGAAACGCTGCCACACATTGGGACAAATCTATAGATTTACTTAACCTGTTACCTACCTTTGATAGTACAAACAAGAAAATTGTAGCATTACTAGAAAATGATCAAATAATTCTAATTAACCAAGGTATAGAGAGAAATAAAAACGAGAAAACTAGGCCATATTCAAATAGTGTTAAAGATTTGAAATGTCCTGCGTGTAACAAACAATTTAAGTATGCAAACCATTTAAGCCAGCATTTAAAAGAATCGTCAGACTTCATACGAGCTTGCCATGTATGTGGAAACGTAATGCAACGGGATGAATTAATTACTCATTTAATTAACACACATCATAGAGACCCGTTTGACTGCAAAAAATGTCCCGCGTTATTCTTTTCGTATAACCAATACAAGGTACATTTACTTAGTGCTCACAAATCTGGGTCTTGTACGTGTGGTGAGTGTGGACGTAGATTCCAAAGCCAGTACGGTTATAATGCTCATCTCTCTGTCCATACACCGAAGACCTGTCCCGGCTGTGACAAGCTGTTCCGTAACCAAAAGTGTTACCGATACCATGTAAAACGCTGCTGTAATTTAGACAAGAATAGATCTGATACGAATCACACTAAAACTAAAGTTACTATCACTATTAAGAAGAAGAATAAAGATATTAAAGTCGGTCTACGCGGCAGTGCAGATACAGAATGTATTTGTGACTACTGCAAAAAGAAATTTAAAGGAAAGAAATTCATTGCTGCTCATATACAGATTGTGCATATGAAAAACACACATAAACCCTGCATATACTGTGGGAAATCCCTTGCAGCAGCTCATATGACAACGCATATGAAGAAACACATATCCACAGAAGCTTACATGTGTGGACACTGTGGTATTATACTCAAAACTAAGTTAGGTTACAGCCAACATGTACGTTTACACACCGGAGAACGTCCATACATTTGTAACCACTGTGGTGAAGCGTTCTCTGCGTCTTCCAGACGTTCGGAGCATATAAGAAAGTGTCATAAAGACCCAAAAGCTAACTTGCATGCGTGTGATAAATGTCCAGCAACGTTTAGACTACCGTATCGTTTAAAAAAACATATTAGCTCCGTACATGGAGACGGACAGCAGAAACCGCTGCAGTTTGAATGTAATGAATGCCATCAGAAGTTTAGCACTTGTCGAGGGTTGTTGCATCATAGCAGGACACATCAGGAAGGATTCGAGAAAAGAAATACTAAGAAAATAGTTAAATGTGAAATATTGTATTAA
- Protein Sequence
- MSRQVDIKALVSHIVHGDGVDKCRICMGETGEGQMHLEDTVMMDGDKPVTLAELLEVITGVQVLVEDNLPPGLCSTCSKSAIDAANFRTLTRNAATHWDKSIDLLNLLPTFDSTNKKIVALLENDQIILINQGIERNKNEKTRPYSNSVKDLKCPACNKQFKYANHLSQHLKESSDFIRACHVCGNVMQRDELITHLINTHHRDPFDCKKCPALFFSYNQYKVHLLSAHKSGSCTCGECGRRFQSQYGYNAHLSVHTPKTCPGCDKLFRNQKCYRYHVKRCCNLDKNRSDTNHTKTKVTITIKKKNKDIKVGLRGSADTECICDYCKKKFKGKKFIAAHIQIVHMKNTHKPCIYCGKSLAAAHMTTHMKKHISTEAYMCGHCGIILKTKLGYSQHVRLHTGERPYICNHCGEAFSASSRRSEHIRKCHKDPKANLHACDKCPATFRLPYRLKKHISSVHGDGQQKPLQFECNECHQKFSTCRGLLHHSRTHQEGFEKRNTKKIVKCEILY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -