Malb007225.1
Basic Information
- Insect
- Meganola albula
- Gene Symbol
- -
- Assembly
- GCA_936440415.1
- Location
- CAKZFH010000080.1:502943-504693[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.4 3.4e+02 2.1 0.2 3 18 73 88 72 88 0.90 2 11 3.5e-07 2.7e-05 24.5 1.7 2 23 166 187 165 187 0.95 3 11 0.0061 0.47 11.1 1.9 1 23 192 215 192 215 0.95 4 11 0.00052 0.04 14.5 1.5 2 19 221 238 220 238 0.96 5 11 0.078 6 7.6 2.3 3 23 248 268 247 268 0.96 6 11 3.5e-05 0.0027 18.2 2.3 1 21 271 291 271 292 0.95 7 11 1.7e-05 0.0013 19.1 0.5 1 23 301 324 301 324 0.96 8 11 0.00019 0.015 15.8 0.9 2 23 331 352 330 352 0.96 9 11 0.04 3.1 8.5 3.2 1 23 358 380 358 380 0.96 10 11 0.039 3 8.6 1.1 1 23 386 409 386 409 0.93 11 11 0.0012 0.094 13.3 5.8 2 21 415 434 414 436 0.94
Sequence Information
- Coding Sequence
- ATGGTGGTCGAAGACGCATCCCGAGCAGCATTCACCTACTTGATTGGCAAAACTCAACAAATTTGTAGGTTATGTTTATCTTATACAAAAGATAAATCTGTGTCACTAGACGAGGATATAAAGTTAAAGAAGGAATTCTTTGAAGAAACAATTCCTCTTTCGGACATTTTAAAGGACCTGTCGGTCTCTCAAGAAGACTGCTTACCTCTAATATTATGTACAGATTGTGCCAAGATGGCTACAACTTCATATTTGTTTAAAAAGCTATGCAAATTCTCCAGCTACACATGGAACTTTGCTGTTGAGAAGCTTTACATGAGACTGAACCAATACATAGCAGAGTCTAATATTGACTCAGCATATTTAATGATTAATGAAGACAAAAATGTTGAAGTTAAAAATATTAAACCTCACAAAAACAAGACAAAAAAATCTGCAAGCAAATTTAGTCGAACGAAAAAAGCCACATCTGTAAGAAAGAGCACAGCACCTTTAATTTGTGACGAGTGTGGGAAATCATTTAAATCTACAAGCCATTTAAGGAAACATGTGGTAACTCATAGCAAAGATTTGTTTACATGTACCGAGTGCTTCAAGGCATTCACTGCTAAGTTTAAACTTGACTACCACAGAGAAAGAGTGCACCTTCCTAAAACAATACATTGTCCTAAATGCCCAAAAATGTTTACTACCACATACTTCTTAAAAAAACATGATACAGATTTCCATCAAGCTGCTATATGCAAGTTTTGTTTCATACAACTCCCATCCAAACACCTATTACAAAAACATTTGAGTTCTCATGAAACTCATCAATGCCAACTGTGTAGCAAAACATTTTCTACCAAAGACAGTTTTAGATTGCACTTAAAAATTTGTGGTGTTGACCGACAACCAAACTTTTTTTGTGATATCTGTAACAAAGGATATGCTCGGAAAAATGGATTGCGAACTCATTTGAAAGTAGACCATGGATTCGGGAATGTTCTATCCTGTAAATGGTGCAATAAAAAATATGATTCTATTAGTCAGTTGAAAATTCATCAAGTCAAACATACAAAGGAGAAAAACTATTACTGTGAACATTGTGGTGGCAAGTTTGTTACACATGCAGCTTTAGTGTGTCATGTGAGGCTTCACACTGGAGAAAAACCGTATCAATGTGATCTCTGTGACGAAAGCTTTTTATCTGCTTCACGTAGAATGGATCACAAGAGAAGAAAACATTTCGCTCCTTCTAAAGAATGTGAAGTGTGCCATACTAAGTTTGTAACCAATTTCCAACTCAGGAAACATATGAAGTGTCATTTAAATCCAAAAAGCAAATTATTTGTACCTAATGCACTGTTACCGTTAAGTACCACACTACTTGATGAGAAAAAAGGTCAAGAGGATGATATTTATACATAA
- Protein Sequence
- MVVEDASRAAFTYLIGKTQQICRLCLSYTKDKSVSLDEDIKLKKEFFEETIPLSDILKDLSVSQEDCLPLILCTDCAKMATTSYLFKKLCKFSSYTWNFAVEKLYMRLNQYIAESNIDSAYLMINEDKNVEVKNIKPHKNKTKKSASKFSRTKKATSVRKSTAPLICDECGKSFKSTSHLRKHVVTHSKDLFTCTECFKAFTAKFKLDYHRERVHLPKTIHCPKCPKMFTTTYFLKKHDTDFHQAAICKFCFIQLPSKHLLQKHLSSHETHQCQLCSKTFSTKDSFRLHLKICGVDRQPNFFCDICNKGYARKNGLRTHLKVDHGFGNVLSCKWCNKKYDSISQLKIHQVKHTKEKNYYCEHCGGKFVTHAALVCHVRLHTGEKPYQCDLCDESFLSASRRMDHKRRKHFAPSKECEVCHTKFVTNFQLRKHMKCHLNPKSKLFVPNALLPLSTTLLDEKKGQEDDIYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -