Malb007239.1
Basic Information
- Insect
- Meganola albula
- Gene Symbol
- -
- Assembly
- GCA_936440415.1
- Location
- CAKZFH010000080.1:762457-765861[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3 2.3e+02 2.6 0.6 1 23 291 316 291 316 0.89 2 17 0.0001 0.0079 16.7 4.0 1 23 321 343 321 343 0.98 3 17 0.0096 0.74 10.5 0.6 1 23 373 396 373 396 0.96 4 17 0.094 7.3 7.4 0.4 5 23 460 479 457 479 0.91 5 17 0.00021 0.016 15.7 1.2 1 23 485 508 485 508 0.91 6 17 0.0038 0.29 11.8 0.8 2 21 512 531 511 532 0.93 7 17 0.026 2 9.2 0.2 1 23 540 563 540 563 0.96 8 17 0.0093 0.72 10.5 0.1 2 23 604 625 603 625 0.93 9 17 0.083 6.4 7.5 2.7 1 23 631 653 631 653 0.95 10 17 5.5 4.2e+02 1.8 0.3 2 12 659 669 658 675 0.79 11 17 1e-05 0.00079 19.8 0.9 2 23 690 711 690 711 0.97 12 17 0.015 1.2 9.9 0.4 3 23 717 737 716 737 0.94 13 17 0.00011 0.0082 16.6 1.3 1 23 755 778 755 778 0.97 14 17 5.1e-05 0.0039 17.6 1.0 1 23 784 806 784 806 0.98 15 17 5.5e-05 0.0043 17.5 4.3 2 23 813 834 812 834 0.96 16 17 1.5e-05 0.0012 19.3 2.3 1 23 840 863 840 863 0.97 17 17 1.9 1.4e+02 3.3 2.1 3 23 870 891 870 891 0.97
Sequence Information
- Coding Sequence
- ATGACTGAAGAAAATATTATTCATCAACCAAATGATATTCAAAATGAAATGATGAATAGAAACTGGGTGAAATCTAAACTAAAAACATTATGGACTGCACCCAAGTTCTGCGGACTTTGCTTGGAAGATCAGGGCAACTTCACACTGCTGGAAATGGAGATTATCATCAGTAACCAACAGAGTTCTAAATGTTTACAGGATATTATTAATTATGTTTTTTGTGAAGATATCCAAAACATTACATCCAGCTCCTACTTATGTGACAAGTGCACAGAAAAAGCAATTCAGTCATATCTCTTCATACATAATTCTAAACAACTATCAAAAATAATCAGCAACTGTGTTTCTGATATTTATTCCAAAGCTGTAGATGTTAATGAAGGAATTGATTGCAGTAAAAATTATGAGAACTCGAATGTAATGATAGTGCTAGAAGATGATATAAATTTGTACGGTACAGTAAACATGAGGCCTATAACAGAGATAATGCCTATAGCAACACCAGTAACTAAAACATATCTAAAAGCACCCACAGATAAACCAAAGCCAGATGGAAAAACATCAATAATGATAGATAACCTGAATGTTTCTATTACAAAACCAGTGATAGCTGTAAAGAAACCAATAGAGCCTGAAAAACTGGTAGTTGCTGACGAAAAAACAAAAATTTATATGAAAAAGACAAAACTAGAAAAACCATTAAAACTTGAATCACAAATTAAAGACGCAGAAAAAATTGGTGACATAAAACAAACTAAAGAGGTTTTAGAACATACAACTGAAACAAATATAAGTTCAAAAGGTGGTCATATAGTTGTAAAGCCTTTAAGCTCATTCAAAAGCTCGACAGTAGTGCCAAAATATAATGTGTATAAATGTGAAAGTTGTCCAGACAATATATTATTTACTTCGTACAGATCTTTAAAAGAACATGAAAAAGCTAAACACAAACCGTGTGTCTACTGCTGTAAGCTTTGCAACAAAGTTTACAACACAGCACAATATCTACAAATTCATTATAAGACACATAATAAGTCCACATGCAAATTGTGCAAAGTCATAGTTCCTGATGAAGAATTGATGGACCATTTGCGAAAATCTCATGCAAATAGTGTCTTCCCATGTCATTTCTGTGATTTAGTGTACTATACACAAGAAGCAGTTGAAATTCATTTTAAAATTAGTCATCTAGTTAATGTGACAAAACAGAAGTCACAATGTATTATGTGCCTCAAAAATTTTGAAGATTCAGAGCTAAGGAAACATAAATGCAAGTTTTCTTGTTCAGAATGTTTCACAGCACCCTGTATTCATTATAAATATCTCAGGTCGTATAGAGAGCAAATTATGAACCACTCAAATGTAGTGAAGTGCATATCTTGTGATTATGTGACTAAGAGAAAAGAATATTTGATATCACATGCAAACAGAGAGCATTTAGACCACCATCCTTTCACTTGTGCGGACTGTGGACAGCAATTTTATACAAAAACTAGTTTAAAGTCACATGTAGTTCAATTCCATCAAGACTTGAACTGTCCATATTGTGATTTTGATTTTAAAGATCATAATACATTGGAAACACATAAGAAGGCTTGTAAAAATGTCACCAGATGTTTTACATGTGATCGATGTGTTGCTTCCTTTGACACAATGAATGAACTGTCTGATCATATCAATTTAAGACACAGTGAAGGTGTGCATGCTTGTACATTGTGCAAGTGTAGGTTCTTAACAGTAATAGAGTTAAAGGAGCACCATGCTAAAGCTCATGGAGGAATTCAAGTCAAAAAACGAAGAAAACATATAGAATGCTCCCTTTGTAACCTAATGTTTAGCAACATTAAAGAGCTGTTAGCCCATGAAGAACTTCATAATCCAGGAGACATCTATCCTTGCAAAGTTTGTCCCAGAAAATATAACTCGCTTATGAAATTGTATATGCACAACCATAGGCATTATACAGATAGAGTAAAATGTAAAGGATGTAATAAGAATATAGCAACGTCTTTCTACCAACAGCATGCAGTAAAATGTTCCTCTGCACAAGATGCGGTGTTAGTTAATGTGTGTGAAATCTGTGGCAAAGGATTTCATACAGAATCTACACTACGTGTACATCTTAAATCTCATGTTAAATCTGAGCCATGTCCTTTATGCAATAAATTTGTAAAACCTTCTAGTATGAAAAAACATATGGAATCAACGCATACCAATAATTCCTATGAAATAGTTGAGCGACGAGCTGGCACAAAAGGTGCTTTCGAATGTGAGCTATGTGGACATTCAATGAGAAAAAAATCAGATTTAGAAGCCCATATGAACAGATATCACTTGAAAATCAAGCCATATGTTTGTAATATATGCAATAAAGATTTTTGTGGGAAGGCTCGTTTGAAAGAGCATATAGCAACACATAGTTCTGATAATAGTTGCTTCTGTCCCGAATGTGGCAAAAAGTTTGCTAATAGGGTATGCCTAAAAATGCATTATCGAATTCATACTGGCGAAACGCCGTACACCTGTGATATCTGTGGCCAGAAATTCAGGTCTTCCAGTATGATGAAGACACACAGGTTGAAGAAACATTTAGAAAAGACAGTTGGGTGTCCCTTATGTGATAGTATGTTTTCTATAGTTAGAGATATGAGGCATCATTTTAAAAAGAGTCATTGGAAACATAAAGATGTGCCCTTTGATCCGAAATTGGTAAAAGAATTGGCTCCTGAATTCTACCATTTATTTGAGGATGGTAGGTTGCCGAAGATCACTGAAAATTCTTGA
- Protein Sequence
- MTEENIIHQPNDIQNEMMNRNWVKSKLKTLWTAPKFCGLCLEDQGNFTLLEMEIIISNQQSSKCLQDIINYVFCEDIQNITSSSYLCDKCTEKAIQSYLFIHNSKQLSKIISNCVSDIYSKAVDVNEGIDCSKNYENSNVMIVLEDDINLYGTVNMRPITEIMPIATPVTKTYLKAPTDKPKPDGKTSIMIDNLNVSITKPVIAVKKPIEPEKLVVADEKTKIYMKKTKLEKPLKLESQIKDAEKIGDIKQTKEVLEHTTETNISSKGGHIVVKPLSSFKSSTVVPKYNVYKCESCPDNILFTSYRSLKEHEKAKHKPCVYCCKLCNKVYNTAQYLQIHYKTHNKSTCKLCKVIVPDEELMDHLRKSHANSVFPCHFCDLVYYTQEAVEIHFKISHLVNVTKQKSQCIMCLKNFEDSELRKHKCKFSCSECFTAPCIHYKYLRSYREQIMNHSNVVKCISCDYVTKRKEYLISHANREHLDHHPFTCADCGQQFYTKTSLKSHVVQFHQDLNCPYCDFDFKDHNTLETHKKACKNVTRCFTCDRCVASFDTMNELSDHINLRHSEGVHACTLCKCRFLTVIELKEHHAKAHGGIQVKKRRKHIECSLCNLMFSNIKELLAHEELHNPGDIYPCKVCPRKYNSLMKLYMHNHRHYTDRVKCKGCNKNIATSFYQQHAVKCSSAQDAVLVNVCEICGKGFHTESTLRVHLKSHVKSEPCPLCNKFVKPSSMKKHMESTHTNNSYEIVERRAGTKGAFECELCGHSMRKKSDLEAHMNRYHLKIKPYVCNICNKDFCGKARLKEHIATHSSDNSCFCPECGKKFANRVCLKMHYRIHTGETPYTCDICGQKFRSSSMMKTHRLKKHLEKTVGCPLCDSMFSIVRDMRHHFKKSHWKHKDVPFDPKLVKELAPEFYHLFEDGRLPKITENS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -