Malb008402.1
Basic Information
- Insect
- Meganola albula
- Gene Symbol
- -
- Assembly
- GCA_936440415.1
- Location
- CAKZFH010000093.1:162204-166143[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 9.7e-05 0.0075 16.8 0.9 1 23 294 317 294 317 0.92 2 11 0.02 1.6 9.5 2.4 1 19 331 349 331 353 0.92 3 11 1.8e-05 0.0014 19.1 3.7 2 23 359 380 358 380 0.97 4 11 6.4e-05 0.005 17.3 1.2 1 23 384 407 384 407 0.95 5 11 0.00036 0.028 15.0 1.1 1 23 410 432 410 432 0.98 6 11 0.00016 0.012 16.1 0.7 3 23 504 524 503 524 0.96 7 11 0.031 2.4 8.9 0.3 2 23 544 566 543 566 0.96 8 11 7e-07 5.4e-05 23.5 4.1 1 23 572 594 572 594 0.98 9 11 0.0017 0.13 12.8 3.1 1 23 599 621 599 621 0.97 10 11 0.12 9.2 7.1 3.7 2 21 628 647 627 650 0.91 11 11 0.06 4.6 8.0 1.7 3 19 690 706 689 711 0.94
Sequence Information
- Coding Sequence
- ATGGACGGCGAAGATAATAACATGGAAGCTGACGGTCCTTTTCCGATCATTTTTATACCAAAAGTGTGTACTTCTTTGGAGACTAACTGTGAAATGTCCGAAAATGTTTTTATACACTTGAATATCACGTCTCCAGACACCGAGGGTGGAGAAACTATGATTTACAAAGGGCTATGTAATGTCAAAGTGGTGGATAGACAAGATATAACTATCAGATACAACACAGCCGATGGTATCACTACCGAAAATGTCCCCATAATCTTAGCTGAGGCTAACCAAATCTCATTTCCGACATACAACGATTCCCAAGTATGGATTGACCCATCACGGAGTCCGTATGTTTACAATGGATGTGATTCTCCTTTAGGGACATACACGATTCATGAATCTAATGATAATCACATTACAATAGAACAACACAATACATATATTACACAAAATGTATTTAACTATAATAAAGCTATCAGATACTCTCCTGTTCCTGAAGAACCAAAGGTTAAGAGACCAAAGAAAGTTCCGGAAACTGTACAAGCAGATACATATAATACGTATGGAGAAGATGAGTTTGAATGTGGAGTATTTCTCTCTCAACTCTCCGAAGAAATAATACATGAAAAAGAGTCCAAACTTAGAGAAGAAAGGAAGTTTGTAGGACTGAAAACGGATAACGAAGCATTAAAGCAGTTGATGTCATCAGATATTCAGTCTGTGTCACGACAACAAAAGACTATTCTCTTTTTAGGTCATGATTCTGAGTCGGGACAGACTATACAGAATATTGCTATTAACGATCCATCGTTAGAGTGTATGGGGACTGGAGATGTGTCAAATGAAGTTGTTATTGACAATTCCATTAATCCCAACCCACGAGCCAAGAAATACCAATGCAACAAATGTAAGCAAATATTTGATCAACTCTCAGCTTTCAAACAACATATGGTAGGCAGCCACAGAATCTCAAACTTTCTCGACGTGACAAGCAACGTGCGTTTTATATGCACAGAATGTGGGAAAAACTTAAAAACTAGAGAAAAATTCGAGCAACACTGTCTTGGTCACGGCGACCCGGAGTTAGAATGTAATAAGTGCCATAAAGTTTTCGCTTCAAAATTTACTTTACGGAATCATCGTAAGATACATTACCGCAGATTTCCCTGTGGGTACTGTTCGAAATCTTATACTACGGAGTCAGAATTACACTCACATACAGCTAAAGCTCATTTCGCTTTCGTATGCAATATTTGTCCATTCACTTGCTCAAATCATATAGAACTCGCAGCTCACCAGGAGTCCCATAATAATGGAGAGGAGGACTCGTCAAAAAATTCGAGCGAGTCCGAATTCACAGGCAGCCTATTTGAGGAAATTATCACTGACTTTTCGGTCCCCGAAAACGTGAAGTCCGAAGACGAAACTACGAGGTCTGCAGATTCAGTGATAGCCAAAGTGATGTCGAATAATTTGTTCCGAAATACGCAGAAAAGGCGGCAAAGACAATATAACAAGAACTGTGAGGTATGCTTTAAAAAGTTCGACCGCATCAGCGATCTCAAGCGACATCTAATCGAGCACGTTATCCAGAGCACACTCGCCAAAAACCCCGTCAACAAATATGGTGTCCTAAACATCCGCTGTGAGATCTGCCAGGAGAAAATCTTCACAAGAATCGACAGGTACAAAGCACATTTACGGGAACACGCTAAATTAACTATCTACAAATGCACATTCTGCGATAAATCCTTCAGTGATTCTAGTAATTTTTCTAAACACAAGAAAATTCACGGTGCCACTTATTTCCAATGTGATTTGTGTCAAAGGAAATTTAATTCTAAAAAAATGATAGCACAACATATGGAGCACCATAACAAACACGGCCCAGTCAAATGTATCTATTGTGATAAAGAATTTCATTTTGAATCAATGTTAAATAAACATATAAAATGCACTCATACTAAAGAATTGACAAATAAATTCAGGTGTCGATTCTGTGGTAATTATTTTAGTTGTTTAAGAGAGAAATGGGATCATGAATGGACGGTGCATAATGTGAGGAAAGTGATTGTTGATTGTTTGATCTGTGGGTCTCGGTTTAGGAAGTATGCTGAGCTAAAAAGACATTGCTCTGATGAGCATGATGCGGTGATACCGTCAGCATCACGATTGCTCAAGTGGCGTCAGAAAAAAAAGCTTAAAATGTACAAGTAG
- Protein Sequence
- MDGEDNNMEADGPFPIIFIPKVCTSLETNCEMSENVFIHLNITSPDTEGGETMIYKGLCNVKVVDRQDITIRYNTADGITTENVPIILAEANQISFPTYNDSQVWIDPSRSPYVYNGCDSPLGTYTIHESNDNHITIEQHNTYITQNVFNYNKAIRYSPVPEEPKVKRPKKVPETVQADTYNTYGEDEFECGVFLSQLSEEIIHEKESKLREERKFVGLKTDNEALKQLMSSDIQSVSRQQKTILFLGHDSESGQTIQNIAINDPSLECMGTGDVSNEVVIDNSINPNPRAKKYQCNKCKQIFDQLSAFKQHMVGSHRISNFLDVTSNVRFICTECGKNLKTREKFEQHCLGHGDPELECNKCHKVFASKFTLRNHRKIHYRRFPCGYCSKSYTTESELHSHTAKAHFAFVCNICPFTCSNHIELAAHQESHNNGEEDSSKNSSESEFTGSLFEEIITDFSVPENVKSEDETTRSADSVIAKVMSNNLFRNTQKRRQRQYNKNCEVCFKKFDRISDLKRHLIEHVIQSTLAKNPVNKYGVLNIRCEICQEKIFTRIDRYKAHLREHAKLTIYKCTFCDKSFSDSSNFSKHKKIHGATYFQCDLCQRKFNSKKMIAQHMEHHNKHGPVKCIYCDKEFHFESMLNKHIKCTHTKELTNKFRCRFCGNYFSCLREKWDHEWTVHNVRKVIVDCLICGSRFRKYAELKRHCSDEHDAVIPSASRLLKWRQKKKLKMYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -