Malb015443.1
Basic Information
- Insect
- Meganola albula
- Gene Symbol
- -
- Assembly
- GCA_936440415.1
- Location
- CAKZFH010000225.1:580125-582902[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0025 0.19 12.4 1.8 1 23 79 101 79 101 0.95 2 13 2.6 2e+02 2.8 0.6 3 23 131 152 131 152 0.89 3 13 0.00024 0.018 15.5 0.5 1 23 174 196 174 196 0.99 4 13 0.00018 0.014 15.9 0.4 1 23 200 222 200 222 0.96 5 13 0.077 5.9 7.6 1.7 1 23 342 365 342 365 0.91 6 13 1 77 4.1 0.4 2 23 390 412 389 412 0.92 7 13 0.11 8.7 7.1 0.1 1 23 436 458 436 458 0.96 8 13 0.00035 0.027 15.0 0.5 2 23 463 484 462 484 0.95 9 13 2.4e-05 0.0019 18.7 1.3 1 23 489 512 489 512 0.96 10 13 0.0054 0.42 11.3 0.4 2 23 519 541 519 541 0.93 11 13 4.4e-05 0.0034 17.8 3.8 1 23 548 571 548 571 0.97 12 13 3.1e-05 0.0024 18.3 4.8 2 23 578 599 577 599 0.96 13 13 7.8e-05 0.006 17.1 1.7 1 23 605 627 605 627 0.98
Sequence Information
- Coding Sequence
- ATGCAATTGGGCTTACATATTCGACATCTATGCCCCCAAGATAATAAATCTTTTTCATTTCTAGGTATCGAAATTATATCAGACATCGAAGTTGTAAAAGGCAATGACGCTGTTACCAGTCCAAGAATAACAGAAACCACCAAAAGGATGGACGATATAAAAGCCAGAAAACGTCACGCGGTGATTCTATTGGACTGCTCCAAAATATGTCCATTTCGATGGATGAAGAACATGTTCCTATGCTTTCACTGCGAAGAACAATTCACCGATCCGGAGAAACTTAGACTTCATAATTTAACTCACAGTGATGTTACAACTCTTGATATTAAAATTGCGTTTTCAACACTTAAGAAATACGAATTAGTTAAAGTAGATATTACTGATGTTggctgcaaactttgtgaagatgtaattccagatttcgcatatctaaaacatcatttacgagagaaacatcagaaaaaattagatccgaatcttcaagatggtgttctaccttttaaagttaacattaacgattacaaatgtgcgttatgttcagaagaatatgtacaatttaaatctctaaaccaacacatgaatgttcacttccaaaactttatttgtgagcaatgcggtacaggttttataactccagatcgtttgagaactcatcgattttcgcacgaaaccgGATCCGACTCGATACCCGACTCAACATTACACGACGCGAAGCGGCGAAAAACACCCATATTCCAAGTAGAATATGACAGGAGTTTGTGTAAACCAATGGGATCTTTAGAAGACTTCAATAGTTTTATGAAAAATCATTTAAAAGACCTATCTGCACATACAAAAGAGCACACGCCTTCTCGAAGCCCCTCGCCTCTGTACATGCCCAATTCCTCGCCAACATACCTCCAAAATACAGAATCCATGGTATTAGAACAACCAAAAATGAAGAAACAAACGGATATAAGGCAAAACGCGTTAATAATATTTGAATTTTCGAAAGCGTATCCTTTTATTTATGGAAATAACAAATTCAAATGTTTCATCTGCTCGCAACCGTTTTTCGACATTGCTTTACTGAAAGAACATTTCCACGAAACCCATTCCTTTGCTCCGTTAAAAAGACTACTAAACAACCGTCGAGAAAATGTCCTGAAGGTCGACGTTAGTGATTTGAGTTGCAAATTGTGTTCAGAAAATCCTTCAAACTTCACCGATTTAAAAATACATCTCAAGGAATCCCACAATAAACCGTTGGACTTAACAATCCAAGACAATTTAATACCATTTAAACTAGAATTACGAGATGGTTCATACAAATGTGTTATTTGCGAACAGAATTTTATAAAAATACGTATTTTAGTTATTCATATGAGCGTACATTTTAATAACTGTAGCTGTGAGATTTGTGGCGCAGGATTCATGACTTTACGTTTACTAAAGAAACATTTAGAAGTCCACGAAGCCGGCAGCTTCCAATGCGACCGATGTAACAAATCATTTAGCACTCCTTATAAAAGAACTTTACATATTCGAGGAGTACATCTCAAACAATTCCCGAGAAGATGTCCTCTATGTCCGGAAAGATTTAATTCGAACTACAAAAGGACTATACATTTACAAGATGTTCACAATCAATCTACTAGGGTCCATAAATGTGAGACATGTGGTCGAGGGTTTAATTTAAAATACCATTTGACAAGTCATGTAAGGTCTGTGCATTTGCAAGAGAGgaatcagcagtgtgatgtctgtcatcagaggttttgtaataaggagtcattgaagagacatatggtgatacacacgggagaaaagaatcacaaatgtgatgtatgtggcatggctttcttgagaaggaagaatttgaaagatcatttaaggctccaCGAAATAAACTGA
- Protein Sequence
- MQLGLHIRHLCPQDNKSFSFLGIEIISDIEVVKGNDAVTSPRITETTKRMDDIKARKRHAVILLDCSKICPFRWMKNMFLCFHCEEQFTDPEKLRLHNLTHSDVTTLDIKIAFSTLKKYELVKVDITDVGCKLCEDVIPDFAYLKHHLREKHQKKLDPNLQDGVLPFKVNINDYKCALCSEEYVQFKSLNQHMNVHFQNFICEQCGTGFITPDRLRTHRFSHETGSDSIPDSTLHDAKRRKTPIFQVEYDRSLCKPMGSLEDFNSFMKNHLKDLSAHTKEHTPSRSPSPLYMPNSSPTYLQNTESMVLEQPKMKKQTDIRQNALIIFEFSKAYPFIYGNNKFKCFICSQPFFDIALLKEHFHETHSFAPLKRLLNNRRENVLKVDVSDLSCKLCSENPSNFTDLKIHLKESHNKPLDLTIQDNLIPFKLELRDGSYKCVICEQNFIKIRILVIHMSVHFNNCSCEICGAGFMTLRLLKKHLEVHEAGSFQCDRCNKSFSTPYKRTLHIRGVHLKQFPRRCPLCPERFNSNYKRTIHLQDVHNQSTRVHKCETCGRGFNLKYHLTSHVRSVHLQERNQQCDVCHQRFCNKESLKRHMVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHEIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -