Malb008438.1
Basic Information
- Insect
- Meganola albula
- Gene Symbol
- ZIPIC
- Assembly
- GCA_936440415.1
- Location
- CAKZFH010000093.1:1079487-1089503[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00055 0.043 14.4 0.0 2 23 171 192 170 192 0.97 2 11 0.0065 0.51 11.0 4.2 1 23 198 220 198 221 0.95 3 11 0.00016 0.012 16.1 0.1 1 23 228 250 228 250 0.98 4 11 1.5e-05 0.0012 19.3 0.4 1 23 256 278 256 278 0.98 5 11 0.0012 0.093 13.3 4.8 1 23 284 307 284 307 0.96 6 11 3.6e-05 0.0028 18.1 2.1 1 23 313 335 313 335 0.98 7 11 1.4e-06 0.00011 22.6 2.1 1 23 340 363 340 363 0.97 8 11 0.018 1.4 9.7 1.1 3 23 370 387 369 387 0.96 9 11 0.00037 0.029 14.9 1.6 1 23 393 416 393 416 0.93 10 11 0.1 7.9 7.3 0.3 1 23 422 447 422 447 0.95 11 11 9.9e-05 0.0077 16.7 3.8 1 23 453 476 453 476 0.98
Sequence Information
- Coding Sequence
- ATGGATATAAAGATATGCCGCATTTGTCTTGACCGAAGTGGTACGATATCTATCTTCACCATTGAGGATGATATCCAGCACAGTACTAGAGTGATGCGGTGTGTTAATGTGGAGGTAGTAGAAGGTGATGGGCTCCCGGACTCAATCTGTGAAACATGTGCTTCAGAACTGTTCACGTGTTATGAATTTGTAAACAAATGCGAAGCCTCCGACAAAGCACTGCGTTCTGCTGATTATTTTACTTCCGATATTATAGATGAGATGTCATGTGTTAAAAAAGAGGTCAACGAAAATGATATTTATGTAAAAAATAGTGATTTAAAAGATTATGTGGATCAAAAAGATTTCAAACTTGTAAACAACTTTAAACTGGAAAACGACTTTGATTTTCCAGACAACTTTTCAGGTACCTTCGACCACTGTAAAGTAAAATCTAGACGTAAATATAAAAAACGTATAAAAGATGGTGAAATAGATAGACGTAAAATGAAGCCAAAAATGGCACCCATAGAATGTGGGATTTGTGGACTTAAGGTCAACAGTAGATCTGCTATGGAGGGCCATATGAGGACTCACACGGGAGAAAAGCCATTTGCTTGCCATGCTTGTGAAGCTCACTTTAATCTTAAAGGGTCACTTAAAAGGCACATACTCACACACCATAGTGAAAGAGAGAAAATGTTTACATGTGAAACGTGTGGTAACAGTTTCTTTACAAAGGGTGCTATTATTGCACACTTAAGAATTCATACAGATGAGAAACCATATGCATGTGCTCAATGTCCTAAAAGATTTACACAGATAGCCTCATTGATCCGACATAAACGCTCACACACAGGTGAAAAGCCACACACATGTCCAACTTGCTTCAAAAGATTTTCTGAAAAAAGTCACATGTTGATACATCTCAAGTATGTTCATAGTGAGGAGAAAATGTTTTCCTGTCAACTTTGCAATAAATCTGTCAAGACTAAAAATTCTTTATATTCGCATATGAAAATACATACCAATGAGACGCATGTTTGTAGTTACTGTGGTATGACCTTTTCATTTAAAGGAAATCTACAGACACACATACAAAGGATGCACTCTGAAAAGTCTGGTAACTGCAATATTTGTAAGAAAAGTTTTGGAGATTTAGAAGGTCATATGAGGAAGCATACCGGTGAAAAACCTTTTATTTGTGAGATGTGCAGCCAAGGGTTCACTTCTAAGCGAAGTTTGTCCAATCATATGAGTTTTAAGCATAATAATGCAGCTAAATTCAAGTGCTCCATAGGAGAATGTTCTAGCACCTTTCCTACAGCTTCAATGCTAGAGTTCCATCTGCTCAAACAGCACACAAATCACACTCCTTTTGTCTGTCACCATTGTTCTCGAGGATTTTTCAGGGGGAGTGATTTGTCTCGTCACCTTCGAATGATACATATGGACATGAATTATCAACAGGTTCCCTTAATTAGAGCCCTCTTCCTGTTGGCCAGCAGGGGAGCGAGACCCTCCGAACCAATAGCGCGGAAATCCGCGGTCAAGTTTCAATCGCGCGCCCTACGTTCCGTGTCGGCTGAGCAGTCGCCATCAGCCACGCTGATGGTAAAACAGTATCTGACGTGCCAGGAGTCGCTGCTGAAAGAGGATCCCCTCTCAAGGATCCAGAGGGAAATAATTGAAGTCACAGAAAGAGAAAGGGAGTTCAAAGAAGGACATTTTAGAATAAATAGACTACTATCAGAATCAACCATCGAGATGAATCACCAAAACGGGCACATGAATGGTGATGTTGATCATAAGAAAACATTAAACAGAGCTGTTTCAACGTCGCATCTGCTCGGCCCCATCGCTCCCTCACCACCCATCACTCCTACACTGTTGAAAACTAATGGATATACGAGACGTTTTACCCCTCAAACAGGAACAAAAGGCATCATGCAGCGATTTATCGCCAGTAAAGGCAAAATGCCTACTACTCCCACGGGAGGTATGCCTCCTACTCCAATCACACCGTTGGCACCTCCTCTAGTGTTCCCGACGACACCGGTCATAGCTCCTGTAATCGCACCGCCTGTTATTACCCGGACGCCAGAAGGCAAACCAGTCAGGAAGGGCTACGTACCAGTAGAGGAAAAAATACAAAAAGAACTACAAGAAATGAAAGATAGGGAACACGAATTAAAGAAGATGAGGAAAAAGAAACAAATGCCTTACGACTTGGAGTTAAGTGACACAGAGTTCACGTCTGAATCTGAGGATGAAGAAATACCACTGCCGGGCAAATTGAAGGCCACCAAGTCGATAGGAGAACTATATGAAGCACTTAATGAGGAGCTTCGCTCGCCTTCACCTAGAAATAGTTCAGGTCAAGATTCGCTCGGCAGCCTGAAGCCCGCCAAATCACTAGCGGAGTTATGCGTGCTGGCCCCCGGTGAAGAATTCCTCGCGCCCAGTTCCACGCGACTCATCGCCAAGTGGGAGTCGCTTATACAACAGAAACAAGAGGCTGGCGCCGCTTAG
- Protein Sequence
- MDIKICRICLDRSGTISIFTIEDDIQHSTRVMRCVNVEVVEGDGLPDSICETCASELFTCYEFVNKCEASDKALRSADYFTSDIIDEMSCVKKEVNENDIYVKNSDLKDYVDQKDFKLVNNFKLENDFDFPDNFSGTFDHCKVKSRRKYKKRIKDGEIDRRKMKPKMAPIECGICGLKVNSRSAMEGHMRTHTGEKPFACHACEAHFNLKGSLKRHILTHHSEREKMFTCETCGNSFFTKGAIIAHLRIHTDEKPYACAQCPKRFTQIASLIRHKRSHTGEKPHTCPTCFKRFSEKSHMLIHLKYVHSEEKMFSCQLCNKSVKTKNSLYSHMKIHTNETHVCSYCGMTFSFKGNLQTHIQRMHSEKSGNCNICKKSFGDLEGHMRKHTGEKPFICEMCSQGFTSKRSLSNHMSFKHNNAAKFKCSIGECSSTFPTASMLEFHLLKQHTNHTPFVCHHCSRGFFRGSDLSRHLRMIHMDMNYQQVPLIRALFLLASRGARPSEPIARKSAVKFQSRALRSVSAEQSPSATLMVKQYLTCQESLLKEDPLSRIQREIIEVTEREREFKEGHFRINRLLSESTIEMNHQNGHMNGDVDHKKTLNRAVSTSHLLGPIAPSPPITPTLLKTNGYTRRFTPQTGTKGIMQRFIASKGKMPTTPTGGMPPTPITPLAPPLVFPTTPVIAPVIAPPVITRTPEGKPVRKGYVPVEEKIQKELQEMKDREHELKKMRKKKQMPYDLELSDTEFTSESEDEEIPLPGKLKATKSIGELYEALNEELRSPSPRNSSGQDSLGSLKPAKSLAELCVLAPGEEFLAPSSTRLIAKWESLIQQKQEAGAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -