Malb015440.1
Basic Information
- Insect
- Meganola albula
- Gene Symbol
- -
- Assembly
- GCA_936440415.1
- Location
- CAKZFH010000225.1:563242-567478[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.072 5.6 7.7 0.2 2 23 48 70 47 70 0.94 2 24 3.4e-08 2.6e-06 27.6 0.8 1 23 118 141 118 141 0.98 3 24 0.089 6.9 7.4 0.7 2 20 147 165 146 167 0.93 4 24 0.24 19 6.1 0.1 1 23 174 197 174 197 0.89 5 24 0.033 2.6 8.8 0.0 2 23 229 251 228 251 0.93 6 24 0.035 2.7 8.7 0.3 2 23 277 298 276 298 0.97 7 24 0.31 24 5.7 0.1 2 23 326 347 325 347 0.95 8 24 0.019 1.5 9.6 1.9 1 21 351 371 351 374 0.94 9 24 0.048 3.7 8.3 0.4 2 22 379 399 378 399 0.95 10 24 0.058 4.5 8.0 0.8 1 23 406 429 406 429 0.94 11 24 0.059 4.5 8.0 0.9 1 23 436 459 436 459 0.89 12 24 0.1 7.9 7.3 3.6 1 23 464 486 464 486 0.95 13 24 0.18 14 6.5 3.1 3 23 538 559 537 559 0.96 14 24 0.073 5.7 7.7 0.1 2 23 584 606 583 606 0.94 15 24 0.00028 0.021 15.3 1.1 1 23 629 651 629 651 0.96 16 24 0.00051 0.04 14.5 1.4 1 21 655 675 655 676 0.96 17 24 0.049 3.8 8.3 0.2 1 23 717 740 717 740 0.96 18 24 0.43 33 5.3 0.6 2 23 766 788 765 788 0.95 19 24 0.0028 0.22 12.2 0.4 2 23 812 833 811 833 0.94 20 24 0.00037 0.029 14.9 0.0 1 23 837 860 837 860 0.97 21 24 0.14 11 6.8 0.8 1 23 864 887 864 887 0.97 22 24 0.62 48 4.8 0.4 1 23 892 917 892 917 0.93 23 24 0.00012 0.0095 16.4 2.0 1 23 926 949 926 949 0.97 24 24 9.7e-05 0.0075 16.8 0.5 1 23 959 982 959 982 0.97
Sequence Information
- Coding Sequence
- ATGTGCGTATTCTGCTGCGAAACCGTCCACGATCCTCCTACCTACCGCACACATATGAAAGAAGAGCACAATGTCTTTAAAGTTGAACACGCCTTCGTCCATTGCACAGAAGGATACTTGAAGGTTGACTGCTCTGAAATTGAATGCAGAATATGCTTACAAACTTTTGAAAAACTCGACAATGTTGCGCAGCATTTGAAAGACACTCATAACCTTGATTTAAACTTGGAGGGACATTTAGGATTGCATCCATTTAAATTTGACCGTGATAAACTTATTTGTGGCGTGTGTGATCTAAACATGCCCTGCCTGCGTCGGTTAAGTCGTCATATCTCCAATCATTTCCTGAATTACACCTGCGACACTTGTGGAAAGTCGTATGCAACTAACTCTTCACTCCAAAAGCATATAAAAACTGTTCACATCAGTCCAGGTATTTCTTGCATGAAATGCCACCAGAAATTTGATTCCACCGACGCTTTCAAACTCCATCAAGAGGAATCGCCTCGCTGCCGTCGGTACATATGCAAATTGTGCAGCAGTAGATTTAATTCTTGGGCCGCTAAACAGGATCATTTAGTCGAAGCCCATGAACTGGAACCTCATAGAAAAGCGAAAAGGAATGCAGAGATCGTCTTAAAATATACAACTGTGTACCCCTTCAGATTACGCGGTAAATCACTGATATGTGTGCACTGCGGGGATGAATATGACGATCCGGCAGAACTTAGGAACCACATCGATATAAACCATCAGAAGTTCAAACTCCGAACTGCTTTTAGCCATCTTGGTTTCAAGGAATACCTCAAAGTTGATTGCTGTAATCTCAAATGTCGAATATGCCTAGAAAGTTTTGACAGTCTTTTCGAGGTAACTGAACATTTAACTACCCACAACAAAACCGATATCCAGGAGCTTGATTTAGGGTATGAAGTTGGCATGCAACCGTACAATTTGATAAAGGACAACGGATGGACTTGTGCTGTTTGTAACAAGAAAGTGCCCTCAATAGTGAAACTTGGTCGGCACACAACATCACACTACACACAGTTTACTTGTGATATCTGCGGAAGAAGTTATCTCACTAATGATGGCTTGAAATACCACGTGAAATGTAGCCATTCCGGAAAAGTAACCTGCCGCAAATGCTGGAAGGAATTCCCTTCGGTGGAATCCAAAAGGAAGCATATAAAGACTTCCCAGAAATGTCAACCATTCCTCTGCACTCGTTGTGGTGAAAGATTTTTATCTTGGGAGAAGAAGCAGAAGCACATGGTCACCGAACATGATTGTCCGCAAGTGAGCTATCCTTGTCCCGAATGTGATATGACGTTTCAAGCAAGAAAACCTTTTTATACGCACTACAAGTTTGAACACAGCGATGAAGCGTTTATATGTTCTTGCTGTGGTTTAAAATTTAACTCCCATAATGAAttagaagatcacagactcagtcacactgGGTCCACATTGGAAATACACGGACGTTCACGCAATGAAACAAATAAGAAAATAGTCCTTGTTTACCAGACGCCGCAGCGGCGAAACGCTGAACTAATACTAACATACTCAACCGCATACCCTTTCAAAACTAGGTTCAGTCAGATTCTATGCGCTTACTGCCACGAAGCTTGTAATACACTCTCAGACTTACGGTTTCATATGAAAAACGAACATCTCAATTCAGATTTTAAAAACGTATTCTATAGAGCTAAAGACAATCTTATCAAAATCGATATAACTAATCTGAAATGTAAAGTATGCGGTCAAAGTATTCAAGATATCGACGGGTTAATGAGTCATTTATACTCTGAACATAATAAGCCCGTCAAATTCAACACTCGCTATGGTGTCATTCCATATAAGCAAGATAGTGAAAACACATACATATGTGTATATTGCAACAAAATTTTCTCATCTTTCATATCTTTTAAACGGCATATTGTAAACCATTTTATGAACTATAGCTGCGATAAATGTGGAACTACTTTTGTGTCTGATCACGCGTTAAAGGATCATCATAGACAGGTCAAGTGTTTCAGGAACACTTACAAAGCTCGTAACGGAAAAGTGTTAGAGCCAAGAACGAATGCAGAAATAATTCTGCAATGTTCCACTGCATGTCCATTTAGGACTTGGAAAAGTCATTTCAATTGCGTTTTGTGTAGAGTTCAAAGTACAGATCCAAGTAGTTTAAGGCTACATGTTAGTACGATTCACGCAAATTATGATGTTAAAGCAGCTTTTTATAAAAAACTTGGAAAAGATTTTCTCAGTATCGACATTACTGATCTTCAATGTAAGTTTTGCTTTATGCCTGTTGATAATTTTGACAACTTTATCTATCATTTGAAGAATGATCATCAACAGCCTATAAATTCTGACGCTCAGTTAGGTGTTCTACCATTTCGGCTAAACGATGGGAGTATATGGAAATGCACTATCTGTCCAAACGAGTTTAAAGATTTTATCTCTCTGAAGAAACATACAGCAGAACATTTTCAAAACTACGTTTGTGATACGTGTGGCGAAGGATTTATAACAGAATCTGCTATGGTAGCACACACGAAGATCCCACACGAAAATAAATACAGTTGCAATCGTTGTATTGCCACATTCTCTTCGTTAGATGAAAGGAATTTACATCTTAAAACCCAGCACACATCTTTGCCATATATGTGTGTTTACTGCAAAGATAAGCCTCGATTCGCGAATTGGGAACTTCGGAAAAAACACTTAATGACCGTTCATAATTATAAAACAGGAGCGGATAAATATGAATGTACTACGTGTCAGAAATCCTTTAAAACTCGGTCGGGGAAGTATAATCACATGGCAAGAGTTCATAGAATCAAAAAAGACTCTGAACTTAATTATCCTTGTCCGAGCTGCCCAAAAGCGTTTACTACGAAATTGTTTTTAGATAAACATATGGCTAAAAAGCATTTTAATGTTTAA
- Protein Sequence
- MCVFCCETVHDPPTYRTHMKEEHNVFKVEHAFVHCTEGYLKVDCSEIECRICLQTFEKLDNVAQHLKDTHNLDLNLEGHLGLHPFKFDRDKLICGVCDLNMPCLRRLSRHISNHFLNYTCDTCGKSYATNSSLQKHIKTVHISPGISCMKCHQKFDSTDAFKLHQEESPRCRRYICKLCSSRFNSWAAKQDHLVEAHELEPHRKAKRNAEIVLKYTTVYPFRLRGKSLICVHCGDEYDDPAELRNHIDINHQKFKLRTAFSHLGFKEYLKVDCCNLKCRICLESFDSLFEVTEHLTTHNKTDIQELDLGYEVGMQPYNLIKDNGWTCAVCNKKVPSIVKLGRHTTSHYTQFTCDICGRSYLTNDGLKYHVKCSHSGKVTCRKCWKEFPSVESKRKHIKTSQKCQPFLCTRCGERFLSWEKKQKHMVTEHDCPQVSYPCPECDMTFQARKPFYTHYKFEHSDEAFICSCCGLKFNSHNELEDHRLSHTGSTLEIHGRSRNETNKKIVLVYQTPQRRNAELILTYSTAYPFKTRFSQILCAYCHEACNTLSDLRFHMKNEHLNSDFKNVFYRAKDNLIKIDITNLKCKVCGQSIQDIDGLMSHLYSEHNKPVKFNTRYGVIPYKQDSENTYICVYCNKIFSSFISFKRHIVNHFMNYSCDKCGTTFVSDHALKDHHRQVKCFRNTYKARNGKVLEPRTNAEIILQCSTACPFRTWKSHFNCVLCRVQSTDPSSLRLHVSTIHANYDVKAAFYKKLGKDFLSIDITDLQCKFCFMPVDNFDNFIYHLKNDHQQPINSDAQLGVLPFRLNDGSIWKCTICPNEFKDFISLKKHTAEHFQNYVCDTCGEGFITESAMVAHTKIPHENKYSCNRCIATFSSLDERNLHLKTQHTSLPYMCVYCKDKPRFANWELRKKHLMTVHNYKTGADKYECTTCQKSFKTRSGKYNHMARVHRIKKDSELNYPCPSCPKAFTTKLFLDKHMAKKHFNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -