Malb007257.2
Basic Information
- Insect
- Meganola albula
- Gene Symbol
- -
- Assembly
- GCA_936440415.1
- Location
- CAKZFH010000080.1:1251964-1279696[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.011 0.83 10.3 1.2 1 23 405 427 405 427 0.96 2 11 1.3e-05 0.001 19.5 1.1 2 23 441 462 440 462 0.97 3 11 1.2e-05 0.00093 19.6 3.1 1 23 468 490 468 490 0.96 4 11 3.8e-05 0.003 18.0 3.3 1 23 497 519 497 519 0.99 5 11 3.3e-06 0.00025 21.4 0.3 1 23 525 547 525 547 0.93 6 11 5.3e-06 0.00041 20.8 0.3 1 23 553 575 553 575 0.98 7 11 5.5e-06 0.00043 20.7 2.0 1 23 581 604 581 604 0.96 8 11 6e-05 0.0047 17.4 2.5 1 23 610 633 610 633 0.94 9 11 2e-05 0.0015 19.0 0.5 2 23 640 661 639 661 0.97 10 11 9.6e-06 0.00074 19.9 1.1 1 23 667 689 667 689 0.97 11 11 0.018 1.4 9.6 0.1 1 23 695 719 695 719 0.93
Sequence Information
- Coding Sequence
- ATGAGCCTCTGTTGTTTTATTTGCAACAACAGTGCTAAGGTAGCATTGAGAAATGCTACgagccttttcacagagcatACCACCTTGCAATCGGGTAAAAAGCTATGTGAGGTTGTCAGTGAAGTTGTAGAGAAACCGGTGTTGGAAAACAAGGTGCACTCCAACATTGTCTGCAAGAAGTGTTTCGCTGCATGTGCCGAGTTCGATGCTGTGAACGAGAGATTAAAATCTTTAAAAAATGATCTACTAGAACAGTTCAAACTATCTCTGTATTGCCATCATCTAAAATATGAAACTTATGAGAAAATGTTTGATCAAGTACCGAAGAAATCGAATACTGTACAAATCGGAAAGAAATTGGTGTTGCCAGCATCAAAATTACAACCCATACCCCCGGATTTGTTGTTAAAAGTTGGCAACTTAGCACAAATGACGAAGAACAATGCTAATCTACAAAATAAGAACAAATCATTCAACTCACAATTGGCAGTCGCTTCAGCCGCCCTCACACAGTCCCTATCAAGTACAACTACATCCAACCAACTAAGCAATGCTGCAATATCAACTGCAACCAACATCGACCCGGTTGTTATTGCATCACAAGGAACCGATATATCTGCAGAATTGTCGTTAAATGATGCTACAGATCCAGATGATGATATTTTTCAGTCGTCATCCAAGATACCGACAGCGGAGTTCGTGGATTGTGAGATGACGGCGGTGGATGACACGCAAAAGTATATATTGTCCAAATTGCAGATCATGAACGAAGATGATGAAGAGACTAGTGCAATAGTAGTGGAGAGTGAGAAGGGGTCAATTCTAAGGGTGATGTCCGGACAGAAGATTGTGTACGAGGGTGGGGAGGTGATGATGGTGCCTGATGATGACCAGGATAATGGAGATAGTCAAGATTCAAACGACGAGTCCCAGATAGAGCTCCAAGTGTCAGGTGACGAAGAAACTGCTAACGCTATCATCGCCGCTGCGCAAGAGCAAGGTGGTGCATTTATTAAGGTGGAATCTGGCGAGATGTTCCGCGTGAAGTCAGTGCAGAGCAGTGTGAAAGAGCCCTTAGATGTGGTACATATTGTGGAGCAAGTCGGCAAACAATTTAAATGTTTGTTATGTGAGAAAAATGATACAGAACCGTATATTGACGACGCGGACGCAGTAATGTTACATCTGAAGACAATCCACGACGCAAGATTGTATATATGCCAGTTTTGCGGTCACGTGCTCAGGAAACGGACGGATTATACTTCTCATATAGCGGAACACGCACAAAAACTGAAACCAGCTAGTAAACACGCACCACTACGTTGCGAGACATGTGGCAAGACATACAACAGTAAGAAACTGTTGCAGGAACATCGGAACATACACACGGGACATCGGCCGCACGCTTGTACACTCTGTGAGAAGGCGTTCGCAAGCAAATATACGTTGCACGCACATATGAAGACACACTCGATTCGGCCTCGTCCGTACAAATGTACGCAATGCAACAAATCGTTCCTAACACAACAGAATCTCAATCAACATGAAAAAACACACAGCGGTGTTAAAGATTTTGTTTGTAATATTTGTGAGAAAGCGTTCAGTACGCAACACAATCTAGAAGTGCACGGTGTAGTACACTCCCGCAACAAGCCGTTCGTGTGTGCTGTGTGCAAGAAGGCATTCGCCAGGAGAAACGAGCTCAGGGACCATGCGAGGACTCATACTGGCGAGCGTCCGTTCGAGTGTGACCAATGTGGCGCGAGATTCTCTCAGCGCTCCAACCTGCACTCACATCGTCGCGCGACACACCTCGGCGACACCAGACACGCTTGTACACAGTGCCCCAAACGATTCAAACGGAAACGTCTACTAGAGTACCATATAAAGGCGTCGCACACTGGAGAACGTCCGCTAGTGTGTCCGATGTGTCCGTCGTCCTTCGTGTACCCGGAGCATTTCAAGAAACATCTCAGAATACACAGCGGGGAACGACCTTTCGTTTGTGAGATCTGTGGGAAGTCGTTCAACTCTCGAGATAATCGCAATACTCATAGATTCGTACATTCGCATAAGAAACCGTACGAGTGTGTGGCGTGTGGTGCTGGATATATGAGGAAACAGCTGCTCTACGCTCATATGAACACCAGCGGACATCTAGCTGAGTCTATTGTAGTGAACCAACCGAGGGTCGTGAAGCTATCTGATACGACTGTATCAACTCAAGTTAGTGCAGTGCAGAGTATTACAAAAAACGAAAAATTAGAAGCTATATTTGAAACGAGTGAGTTAAACGTCGAAGAAAAATCAGTCGATGACATAGGAGCAAGAAACATAATAAATGCTGTTGATATAGACCAGCTGCCTGAAGATGCGGAGATCGTAGCGAATGATGAAAATGGCGCCGTAGTGAGACTAGTTCAGATCAAATTGCCTGATGGTAACTGTGGTTGGATGGCGATTGAATAA
- Protein Sequence
- MSLCCFICNNSAKVALRNATSLFTEHTTLQSGKKLCEVVSEVVEKPVLENKVHSNIVCKKCFAACAEFDAVNERLKSLKNDLLEQFKLSLYCHHLKYETYEKMFDQVPKKSNTVQIGKKLVLPASKLQPIPPDLLLKVGNLAQMTKNNANLQNKNKSFNSQLAVASAALTQSLSSTTTSNQLSNAAISTATNIDPVVIASQGTDISAELSLNDATDPDDDIFQSSSKIPTAEFVDCEMTAVDDTQKYILSKLQIMNEDDEETSAIVVESEKGSILRVMSGQKIVYEGGEVMMVPDDDQDNGDSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMFRVKSVQSSVKEPLDVVHIVEQVGKQFKCLLCEKNDTEPYIDDADAVMLHLKTIHDARLYICQFCGHVLRKRTDYTSHIAEHAQKLKPASKHAPLRCETCGKTYNSKKLLQEHRNIHTGHRPHACTLCEKAFASKYTLHAHMKTHSIRPRPYKCTQCNKSFLTQQNLNQHEKTHSGVKDFVCNICEKAFSTQHNLEVHGVVHSRNKPFVCAVCKKAFARRNELRDHARTHTGERPFECDQCGARFSQRSNLHSHRRATHLGDTRHACTQCPKRFKRKRLLEYHIKASHTGERPLVCPMCPSSFVYPEHFKKHLRIHSGERPFVCEICGKSFNSRDNRNTHRFVHSHKKPYECVACGAGYMRKQLLYAHMNTSGHLAESIVVNQPRVVKLSDTTVSTQVSAVQSITKNEKLEAIFETSELNVEEKSVDDIGARNIINAVDIDQLPEDAEIVANDENGAVVRLVQIKLPDGNCGWMAIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -