Malb017312.1
Basic Information
- Insect
- Meganola albula
- Gene Symbol
- -
- Assembly
- GCA_936440415.1
- Location
- CAKZFH010000286.1:35005-44918[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.4e-06 0.00057 20.3 0.4 1 23 193 215 193 215 0.97 2 13 6.2e-05 0.0048 17.4 4.0 1 23 222 244 222 244 0.97 3 13 1.6 1.3e+02 3.5 2.6 3 21 248 266 247 267 0.94 4 13 0.00022 0.017 15.6 1.8 1 23 274 296 274 296 0.98 5 13 8.1e-06 0.00063 20.2 0.2 3 23 305 326 304 326 0.97 6 13 0.0015 0.11 13.1 0.7 1 23 332 354 332 354 0.98 7 13 4.3e-05 0.0033 17.9 1.9 1 23 360 382 360 382 0.99 8 13 0.007 0.54 10.9 0.3 1 23 386 408 386 408 0.98 9 13 1.4e-06 0.00011 22.6 0.7 2 23 419 440 418 440 0.96 10 13 1.2e-05 0.00095 19.6 0.9 1 23 446 469 446 469 0.96 11 13 0.0092 0.71 10.5 0.3 2 23 479 500 478 500 0.90 12 13 5.2e-05 0.004 17.6 0.4 1 23 505 528 505 528 0.95 13 13 0.00056 0.043 14.4 0.3 1 23 533 556 533 556 0.95
Sequence Information
- Coding Sequence
- ATGTCTGAAATATGGAATTTAAGTACATTATGTCGTTGTTGTCACGTAGATGGCTTGTTCAAAAGCTTAAACGCAGTATATCAATGCAAGAATGGGGTAGAGGTGTATGAAACTATTTTACAAGAAACTTTAGGTCTTACTATATCCTCCCCACCGCTGCAAGCTAGTTACACTATTTGTGACATATGTATTAGAAGACTGCAAGATGCTAAAGAGTTCAAAGACCAGGTGTTGATGTGTGAGAAGAGGTTCAGAATATATTGTTCTAATGAATTGCTTCAAGCAGATGTAATTAAACATGTTGAAATTAAAACTAATGAAATCAAACAGGAAATGGAGTCTGATAATGAAAAAGGTGATGGTCACCAAAATGATGGTGATGATAATTCTAATAAAAAATGTATTGAAGTTAAACTGGAACTAAAAGTAGTCAATCTATCAGATGCACCTGCATACAAAATTGAGTCGACAAAGAATACCAAAGATAAATTGCTCAAAATACAAAGTGACACAAAAAACGAATCCAACGAACAAAACGTGTCTGTTAAAGAACTAAAAACCAATTCCAAGCTTAAGTACGAGTGCAAAGAGTGTTCAAAAGTGTTTTCTTCAAAAAAGCTCATCAAAGCTCACATAATCTTACATCAGCTTAACAAACATTCATATAAATGTAAACAGTGCGACAAAAGTTTTCAGCAAGAAAAATGTCTTATAAAACATTTAGCTAACCACAAAATTCTGTGTAATCATTGTCACCAATGGTTCGAATCTACAAAATCTTTTGAAACACATCTAAATAGGGCTATGTATCCAAAAGAATTCCAATGTGACATCTGTCAAAAGTATTTCAGAAAGAAAATAACTGTATTGAGACATCTTAAATGGCATGCAGGTACTTTGAAGACAAGATTGTGTGATCTGTGTGGGAAAGCATTCAATGATGTTACAAATTTAAGGAAACACATTGATACAGTGCATAAAAGACTTCGTCCATTTGAATGTAAACTTTGTGCTAAAGCTTTTGCTACCATGAAAACTTGGAAAATACATACACAACGGCATGTTAATAAAATAACTTATAAATGTGATAAATGTGCCAAAGAGTTTGCTAGTAAAACAAGTTTTAAAATACATAGGTTGACACATGACGGGAAGTTTAAGTGTCGGATATGTTCTGTCATATTTGATGATCAGACTGCAAAATTATTGCACATGGAAACTCATGATGTTGTGAAACCCAGAAAGATGATGTCTCCTTGTGAGATCTGTGGGAAGGTGTTGTCAACGAAACATTCTTTGAATAGACATTTAAATATACATAACGGTTTAAGGGAGTTTGAATGTGATGTCTGTGGTTTAAATTTTGCCCAAAAAACAATGTTGAAGCGACATTTGTATAGGAAACATACAGAAAAGGGTTTGTCAGAGAAAGGAAAATGTTCGTATTGCAATAAAATGTTTCCGATTTACAATTTGAAATCACATGAAATAAATGTGCATGTCAAACCGAAGTTTGCTTGTGATATCTGTGGCAAACGTTATGCGGAAAATAATACTTTGACTCGACATAAATTAGTGAAACATTTTGGTAGAACATATGATTGTGATGTGTGCGGAAAGAAATATGTACAACGACGAGCTGTTGTGAAACATAAATTGAAAGCACATCAGATTAAATGTGAGGTTGATGATGTTGGTAATGCAAACATCCCAGCTTTTGTTTCACCTTCGTCGATCACGTGA
- Protein Sequence
- MSEIWNLSTLCRCCHVDGLFKSLNAVYQCKNGVEVYETILQETLGLTISSPPLQASYTICDICIRRLQDAKEFKDQVLMCEKRFRIYCSNELLQADVIKHVEIKTNEIKQEMESDNEKGDGHQNDGDDNSNKKCIEVKLELKVVNLSDAPAYKIESTKNTKDKLLKIQSDTKNESNEQNVSVKELKTNSKLKYECKECSKVFSSKKLIKAHIILHQLNKHSYKCKQCDKSFQQEKCLIKHLANHKILCNHCHQWFESTKSFETHLNRAMYPKEFQCDICQKYFRKKITVLRHLKWHAGTLKTRLCDLCGKAFNDVTNLRKHIDTVHKRLRPFECKLCAKAFATMKTWKIHTQRHVNKITYKCDKCAKEFASKTSFKIHRLTHDGKFKCRICSVIFDDQTAKLLHMETHDVVKPRKMMSPCEICGKVLSTKHSLNRHLNIHNGLREFECDVCGLNFAQKTMLKRHLYRKHTEKGLSEKGKCSYCNKMFPIYNLKSHEINVHVKPKFACDICGKRYAENNTLTRHKLVKHFGRTYDCDVCGKKYVQRRAVVKHKLKAHQIKCEVDDVGNANIPAFVSPSSIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -