Malb002450.1
Basic Information
- Insect
- Meganola albula
- Gene Symbol
- -
- Assembly
- GCA_936440415.1
- Location
- CAKZFH010000027.1:1031747-1040474[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.6e-05 0.0013 19.2 6.8 1 23 200 222 200 222 0.98 2 13 4e-06 0.00031 21.1 0.5 3 23 236 256 235 256 0.98 3 13 3.1e-05 0.0024 18.3 2.2 2 23 265 286 265 286 0.98 4 13 6.3e-05 0.0049 17.4 1.8 1 23 292 314 292 314 0.97 5 13 3.4e-06 0.00026 21.3 1.3 1 23 320 342 320 342 0.98 6 13 1.1e-05 0.00086 19.7 8.4 2 23 349 370 348 370 0.97 7 13 1.6e-05 0.0013 19.2 0.7 1 23 376 398 376 398 0.98 8 13 3e-06 0.00023 21.5 1.3 1 23 404 426 404 426 0.99 9 13 0.0022 0.17 12.5 3.4 1 23 432 454 432 454 0.98 10 13 0.00034 0.027 15.0 1.6 1 23 460 482 460 482 0.95 11 13 0.00087 0.067 13.8 0.3 1 23 511 533 511 533 0.97 12 13 0.00042 0.032 14.8 1.9 1 21 537 557 537 559 0.95 13 13 9.6e-05 0.0074 16.8 3.8 1 23 606 628 606 628 0.98
Sequence Information
- Coding Sequence
- ATGGCTGCTCTGAATAAAAATATTTCTTTAAAATTCGATAAAATATGTCGTGCATGTTTGGAGATAAAAAAGGATATGAGACCATTGTTCGAGCAACTCACTGCAACGATGCTGATGGGCATATCTAAAGTACAGGTGGCGGTAGGTGACGGCTTGCCGTCTCAACTGTGCATGCAGTGCGTGCATCAGATCTCGCGATGTCACGCCTTCAAGGAGATGGTTGAGAGGAATGACATTACATTGCATCATCATGCTAAGTTGCGGGCCGAGGAACAGCACAAAAAAGAACAGGAAGAGAAAGAGAAGATTATGAACATGACCTGCACCGACCAGTACATGCAGTACATGGAGGTGCCAACACTCGCCAGCACCAATCAGATCCTCGACAACTTCTTCACAACTACCACTGAACAGCCTGTAGAGACCTTGGTTGTACCGGACAAAATTGAATATGAAGTAGAGATCGCACCGGAGCCATTGGCACCACTAAAGCCAATGGCACCACCAAAATCAAAGGAAGAAGGTCTGAACTCGGATGAAGAGAACTACTTGCAGCTGGTGGTGTTTCAGACTACATCAACCGTGTCACCTGGTCGGCACGTGTGCAATTTGTGCCATAAAGAGTTTAAACACCCGCGTTGGCTGAAGCAACACATGAGGTCGCACAGCAACTGGATTAAAGCTAATTGCAAGAAACCACCCATGTGCACTATTTGCGAAAGAACTTTTAAGGGTCCAGGGATGCTGAAAATGCACATGCGGACACATGAACAACGTCCCCCAAAGCAGCCGACGTGTTCCGTCTGTCAGCGTACATTCGCGACCAAGACACTGCTCTACCGTCACCGACAGACTCACTTCGATCAGAAGACACATATGTGTACAGTGTGCGACAAACGCTTCTACAGCGGGTACGCGTTACGCTCACATATGGCTCGACATCGCGGCGAGCGCCCCTACGTCTGCTCAAATTGCAACAAGAGCTTCTATAACCCGACTGATTTGAAGGTGCATTTCCGCCTGCACACGGGCGAGAAGCCGCTCAAGTGCTCGGAGTGCAACAAGACTTTCCGGCGTCACTCTACGCTTTGTCAACACATGAAGAAGCACCGCGGGATCCGCAACCACGTCTGCTCCGTCTGCAACAAGGGCTTCTACGAGGTCTCCAAACTTAATGCGCATATGAGGGTCCATACAGGCGAGCGTCCGTACGAGTGTCAGTTCTGTGATCGTCGGTTCGCGCAGCAGTCAGCGCTGATCTATCACAAACGTACTCACACGGGAGAGAAGCCGTACTGCTGCAAGCTCTGTTCCGCAAGGTTCACCACCTCCTCCGCCAGGAACAACCACCTGCTCACACACGCAACGAACAAGAGATTCATTTGCCCAATATGCTTCAAGAGTTGCACGTCGCGCACAGATCTACGCTTGCACGGCGCTAAACATTCGGCTGAGATAAATGCTAACAAGAATGCGGGGGAGAAAAACGCGGGGGAGAAGACTGCGGGCGAGAAGGGCACTGTCGAGAAGTACGAGTGTGACGGGTGTGCGCAGACCTTCGGTACTGCCGCTAGCCTCTCTGCGCATCGCTGCCAACACAACGCAGAGTACCAGTGCACCGTCTGTGGGAAAATGTTCCAGGAGGCGGCTGCGTACAAGCGTCACTTGAAATGTCACGAACCTGCTACTGATGATACAACCACGCGTCGCTCCACTGAACTCGCACAAGACATAGTAACAGTCCAGGAGCAAGTACTAGATGACACTCCAATCATCCAAGTGCAGAGTCATGAAAGCAGCACGTCAATCAAGCGGTACAAATGTGCGCTCTGCGTGAAGACCTACGCTCACCTGCACAACTTGAGGAAGCATATGACCATTCATGCACAGGAGCGGGGGCGCAGTGGGGACCAAGTTATAATACTacagccacaacaacaacaacaacagcagcagcagcagcaacaacaacagcagcagcagcagcagcagcaccatcaccaacaacatcagcaacaacaacatcatcaacagcagcatcaacaacaacagcagcaacagcaagctcagcaacagttacaacaacagctacagcaagttactcagcaacaGGTGCAGGCGGCCGCGCTGCAGCAGCAGGTGGTGCAGGTGGGCGGCGTGCCGCAGCTCGCCGTGCCGCTGCATGCGCACGCGCAGGTATGTGTCACTGCTGGAGCGTCATCGTGCCCCACACATCAGCGGCGCCGCGAAGTGGTCCCTCACAACCCTGACGTCTCAGGGGAAACCCCCGACTTGAGGCAGGCCTGCTCTACTAGAGAATAG
- Protein Sequence
- MAALNKNISLKFDKICRACLEIKKDMRPLFEQLTATMLMGISKVQVAVGDGLPSQLCMQCVHQISRCHAFKEMVERNDITLHHHAKLRAEEQHKKEQEEKEKIMNMTCTDQYMQYMEVPTLASTNQILDNFFTTTTEQPVETLVVPDKIEYEVEIAPEPLAPLKPMAPPKSKEEGLNSDEENYLQLVVFQTTSTVSPGRHVCNLCHKEFKHPRWLKQHMRSHSNWIKANCKKPPMCTICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRTFATKTLLYRHRQTHFDQKTHMCTVCDKRFYSGYALRSHMARHRGERPYVCSNCNKSFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHRGIRNHVCSVCNKGFYEVSKLNAHMRVHTGERPYECQFCDRRFAQQSALIYHKRTHTGEKPYCCKLCSARFTTSSARNNHLLTHATNKRFICPICFKSCTSRTDLRLHGAKHSAEINANKNAGEKNAGEKTAGEKGTVEKYECDGCAQTFGTAASLSAHRCQHNAEYQCTVCGKMFQEAAAYKRHLKCHEPATDDTTTRRSTELAQDIVTVQEQVLDDTPIIQVQSHESSTSIKRYKCALCVKTYAHLHNLRKHMTIHAQERGRSGDQVIILQPQQQQQQQQQQQQQQQQQQQQHHHQQHQQQQHHQQQHQQQQQQQQAQQQLQQQLQQVTQQQVQAAALQQQVVQVGGVPQLAVPLHAHAQVCVTAGASSCPTHQRRREVVPHNPDVSGETPDLRQACSTRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -