Basic Information

Insect: Meganola albula
Gene Symbol: Bcl11b
Assembly: GCA_936440415.1
Location: CAKZFH010000242.1:572828-588360[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.015 1.1 9.9 0.9 3 23 231 252 230 252 0.96

2 13 0.0018 0.14 12.8 0.1 2 23 292 313 291 313 0.96

3 13 0.0095 0.73 10.5 0.3 2 19 320 337 319 340 0.92

4 13 0.035 2.7 8.7 0.2 3 23 382 403 380 403 0.90

5 13 0.037 2.9 8.6 0.5 2 20 409 427 409 429 0.92

6 13 7.8e-05 0.006 17.1 0.8 1 23 437 460 437 460 0.97

7 13 0.00068 0.052 14.1 7.0 1 23 481 503 481 503 0.98

8 13 6.4e-08 4.9e-06 26.8 2.2 1 23 510 532 510 532 0.99

9 13 6.8e-07 5.3e-05 23.5 2.4 3 23 546 566 544 566 0.96

10 13 2.1e-05 0.0017 18.8 3.2 1 23 572 594 572 594 0.99

11 13 1.2e-06 9e-05 22.8 2.5 2 23 601 622 600 622 0.96

12 13 3.1e-08 2.4e-06 27.8 1.5 1 23 628 650 628 650 0.99

13 13 0.0077 0.6 10.8 0.1 1 22 656 677 656 680 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.015	1.1	9.9	0.9	3	23	231	252	230	252	0.96
2	13	0.0018	0.14	12.8	0.1	2	23	292	313	291	313	0.96
3	13	0.0095	0.73	10.5	0.3	2	19	320	337	319	340	0.92
4	13	0.035	2.7	8.7	0.2	3	23	382	403	380	403	0.90
5	13	0.037	2.9	8.6	0.5	2	20	409	427	409	429	0.92
6	13	7.8e-05	0.006	17.1	0.8	1	23	437	460	437	460	0.97
7	13	0.00068	0.052	14.1	7.0	1	23	481	503	481	503	0.98
8	13	6.4e-08	4.9e-06	26.8	2.2	1	23	510	532	510	532	0.99
9	13	6.8e-07	5.3e-05	23.5	2.4	3	23	546	566	544	566	0.96
10	13	2.1e-05	0.0017	18.8	3.2	1	23	572	594	572	594	0.99
11	13	1.2e-06	9e-05	22.8	2.5	2	23	601	622	600	622	0.96
12	13	3.1e-08	2.4e-06	27.8	1.5	1	23	628	650	628	650	0.99
13	13	0.0077	0.6	10.8	0.1	1	22	656	677	656	680	0.91

Sequence Information

Coding Sequence: ATGGTTTCTATCCAAGAAATAGACATAAAGACCGAAGATTTGTGTCGAACCTGTTTAACCAAAGAAAATGAATTTCATTCGCTGTTTGACGTGTTTATCGAAGCTGTCCCATTAAATTGTGTGGTTACTTCAGTCACAGGGCTTAAGATCAGTAGGCATGATGGCTTGCCTTCGGTCATATGCAGTGAATGTAAAGACAAAGCTCAGAAAGCATTTGATTTCAAGAAGAAATCTGAAGATGCCCACTTGACTCTAACATCATTATTCAAGAAGGAAAGTAGAAGTTTATCACATGCTACTAAATATTCCAACCAAACAAGTACTAGTATCAAGACTGAAGATTTATTAACAAATGATGATGATCCTGATGATTACATGGACAGTGATGTCAATATACCTATAAATTATGAACCAGAAAATAGTAACAATGTTGAAGAAAAATACTCCCTATTACCAATCGAAGTAGAGGGCCACTCTTCTGAGACCAAACACATGACAAATAAACAAATAAACTTTCTAAGTAAAGATTCAGTTAAAGATAGCAAGGTTGAAGTAGACTGTGATTTTGATAATAAAACTTACTCTGTCATTTTGCAACCAGTTACTAAATCAGGAAAAGATCAAGACAAACTTAAAAAGTATATCAAAGTGGAATGTGAGCAGAGCAGTAGTAATTATCCTGTGTCATTGTGTCCTCTATGTGGCATGTGTTATGATAGTACAGAGACTTTGTCTGGCCACATGTTCAAATACCATTCGGAGGTAATGGGTCTCAAAAAGAGAGGTAGACCAAAGAAAATTTTAGCAGCTACAATACTAAACAAGTTATCAACCAATGGATTCTGCATAACACCATTATCAAAACCCAAAGTGGAATGTGCGCTGTGTAAACAGAGTTTTGAAACCAAAGTAGCCTTAGATAATCATATTGCATCCCACAAAGATCAAAAAGTGTTAATTTGTGTAATTTGCAAGAAAATGTATATAGATAAAGATAATTATGAAGTGCACTCTTGTAATGATGAAAAATCAAAGGAATCGGGTGATAATGAAGAAACAAGCGGCGATACTAATAGAAAACAGGCGCAGTTTCCTACTGAAATATCGTTGCAAGAAGTTCCAGATGTCAAATCAATTCAGATTTGCAGTGTTTGTACACGAGTGCTTGTGACAGAAGATGAACTCACTAGTCACCATGATGCAGAGCATCCAGAGCTGTCTCGACGGTGTAATCTATGTACTAAGACATTCGCAACAACTAGAACGGCAGCTCGCCATAGAAGTTTGTGTAAAGAAGTTGAAAGGAAATTCAGATGTAGTACCTGTGGGCTTAAATTTGCCTACGAAATATCACTAAACAAGCACATTTTACGATATCACGAGGGCCAAAGCGTATCAGTCAAGTTCATTGATCCTAAAACTAAGATGGAAAACAGACAATTCCAGTGTGATACTTGCAATAGATGTTTTCATAAGAGAGAACAGCTAGTGAAACATACCAAGGTACATATGCCAAGCGAAAAGTTCTACCAATGTGACGTCTGTCAAAAGAAATTCAACAGGAGAGATAATTTACGTTCACACCAGCGCGTACACGAAACCCATAGAGACAAAACTCCATCCAAAAGCTGTCTATGTCTGTACTGCGGTCGGAGTTTCTCAAACTCTTCTAATATGATCGTTCACATGCGGCGGCATACGGGAGAGAAACCGTACAAATGCGATTTTTGTGGTAAAGGTTTTCCAAGATCTTCAGATCTTCAATGTCACAGACGGTCACACACCGGGGAAAAACCTTGCGTCTGCCGCGTTTGTGGTAAAGGCTTCTCTCGTAGTAATAAGTTATCGAGGCACATGCGCGTGCACACGGGGCAGAGACCGTACAAGTGTACCTACTGCGACAAGGCGTTCTCTCAGAGCAACGATTTGACGCTTCACATCCGGCGACATACCGGTGATCGACCGTACATTTGCGAAATATGTGGAGATAGGTTCATACAGGGCACAGCGTTACAGAACCACAGACGCGCATACGGACATTTCCCACCCTTGTCTGCTGAGACAGCTACTGTACAGAACATCAGTTTTACTGTTCAGCCTACAAACCACAACATTAACTGA
Protein Sequence: MVSIQEIDIKTEDLCRTCLTKENEFHSLFDVFIEAVPLNCVVTSVTGLKISRHDGLPSVICSECKDKAQKAFDFKKKSEDAHLTLTSLFKKESRSLSHATKYSNQTSTSIKTEDLLTNDDDPDDYMDSDVNIPINYEPENSNNVEEKYSLLPIEVEGHSSETKHMTNKQINFLSKDSVKDSKVEVDCDFDNKTYSVILQPVTKSGKDQDKLKKYIKVECEQSSSNYPVSLCPLCGMCYDSTETLSGHMFKYHSEVMGLKKRGRPKKILAATILNKLSTNGFCITPLSKPKVECALCKQSFETKVALDNHIASHKDQKVLICVICKKMYIDKDNYEVHSCNDEKSKESGDNEETSGDTNRKQAQFPTEISLQEVPDVKSIQICSVCTRVLVTEDELTSHHDAEHPELSRRCNLCTKTFATTRTAARHRSLCKEVERKFRCSTCGLKFAYEISLNKHILRYHEGQSVSVKFIDPKTKMENRQFQCDTCNRCFHKREQLVKHTKVHMPSEKFYQCDVCQKKFNRRDNLRSHQRVHETHRDKTPSKSCLCLYCGRSFSNSSNMIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCVCRVCGKGFSRSNKLSRHMRVHTGQRPYKCTYCDKAFSQSNDLTLHIRRHTGDRPYICEICGDRFIQGTALQNHRRAYGHFPPLSAETATVQNISFTVQPTNHNIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -