Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.059 39 4.5 0.5 9 44 21 51 16 51 0.83

2 8 2.9 1.9e+03 -1.0 0.1 31 42 54 65 52 67 0.87

3 8 0.00032 0.21 11.7 0.1 12 44 72 101 68 101 0.88

4 8 0.00012 0.076 13.1 0.0 11 41 118 143 108 147 0.85

5 8 0.0002 0.13 12.4 0.5 18 44 149 172 143 172 0.87

6 8 0.018 12 6.1 3.1 5 39 253 283 250 286 0.87

7 8 0.019 13 6.0 1.5 6 39 282 311 280 319 0.82

8 8 0.017 11 6.2 3.7 15 44 318 344 309 344 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.059	39	4.5	0.5	9	44	21	51	16	51	0.83
2	8	2.9	1.9e+03	-1.0	0.1	31	42	54	65	52	67	0.87
3	8	0.00032	0.21	11.7	0.1	12	44	72	101	68	101	0.88
4	8	0.00012	0.076	13.1	0.0	11	41	118	143	108	147	0.85
5	8	0.0002	0.13	12.4	0.5	18	44	149	172	143	172	0.87
6	8	0.018	12	6.1	3.1	5	39	253	283	250	286	0.87
7	8	0.019	13	6.0	1.5	6	39	282	311	280	319	0.82
8	8	0.017	11	6.2	3.7	15	44	318	344	309	344	0.79

Coding Sequence: ATGTTCTACGCGAAATGGAACGCCCAAACAATAATACAGTTCACAACGGCTCTTCCGTTTAGACTGCCCGAGAGCTCCATGGTCTGCGTCTACTGTTGCGATAAATTTGACCAACCAGCTCGCTTTAGGGATCATATGAACGATAACCACAAGGTTTTTAATAGCAAAACCGCTCTCTCACACCTCAATCGGAACAATAATGACTATCTAAAAACTGACTATACCGATGTTAAATGTAGAATCTGTTCTGAAACTCTAGACACGATAAAAACCGCGGCTGAACATCTAAAAGAGGCACATAACAAACATATATACTTGGATCATAGTATAGCTATTCATCCTTTTAGATTAGCAGACGATAAATTGGCCTGCGGCTTTTGTGACGAAAAGTTCTCTCAAATAAGAAATTTAAGTAGACATCTTCAAAAACACACTTTCCAATCCACATGTGAGCTTTGCGGCAAATCATATGCAAATAGTGATAATTTAAAAAAGCATCTAGCAGGTTCATGTCCCTTTGTACCTAAACAAAAGAAATGTAGAAAATGTAAGTTAGTGGTTACTTCGACAGAAGAACATCAAAAACATTTGGAAGAATCTCTAAACTGTCGCCAGCACATATGCCCTGAGTGTGGGGATAGATTTGTGAGCTGGCGGCACAAACAACAACATATGAACCAGACTCATGGTGTTCCCTTAAGGGTTTACAAATGTCCCGAATGCAACATGGTGTTTCAAAAACCTGGACAGCTTCGAGCGCATTTTAGTTTTGTGCATAAAAACAACCACTATGAATGTGTGAGTTGTGGACGAAAATATGTCAGCAAGACTGATCTAGAGCGACACATAATTATACATTCCAAGGAGAAACCCTTTTCATGTTACGTTTGTTCCAAAGCGTTCAACCGAAAGTCGACACTGAACGCCCATATGTGGATACATAGCGAAGTAAAGAGATTCGAATGTAAACTGTGCAACAAAACTTTTAATCAGAGAGTTAGCTATAAGACCCATATGAGATCTTATCACCCTGGTTTGGAGGATTCTTCTTAG
Protein Sequence: MFYAKWNAQTIIQFTTALPFRLPESSMVCVYCCDKFDQPARFRDHMNDNHKVFNSKTALSHLNRNNNDYLKTDYTDVKCRICSETLDTIKTAAEHLKEAHNKHIYLDHSIAIHPFRLADDKLACGFCDEKFSQIRNLSRHLQKHTFQSTCELCGKSYANSDNLKKHLAGSCPFVPKQKKCRKCKLVVTSTEEHQKHLEESLNCRQHICPECGDRFVSWRHKQQHMNQTHGVPLRVYKCPECNMVFQKPGQLRAHFSFVHKNNHYECVSCGRKYVSKTDLERHIIIHSKEKPFSCYVCSKAFNRKSTLNAHMWIHSEVKRFECKLCNKTFNQRVSYKTHMRSYHPGLEDSS

Sequence clustering based on sequence similarity using MMseqs2