Mdol013258.1
Basic Information
- Insect
- Megamerina dolium
- Gene Symbol
- -
- Assembly
- GCA_963854835.1
- Location
- OY978526.1:94359741-94363723[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00021 0.02 16.2 0.2 1 23 160 183 160 183 0.97 2 12 0.017 1.6 10.2 3.5 2 23 232 254 228 254 0.92 3 12 0.0071 0.68 11.4 0.0 1 23 395 418 395 418 0.95 4 12 4.6 4.4e+02 2.6 1.6 2 23 469 491 468 491 0.94 5 12 2.7e-05 0.0026 19.0 1.2 1 23 544 567 544 568 0.93 6 12 0.0039 0.37 12.2 2.7 2 23 618 640 617 640 0.96 7 12 0.12 11 7.6 0.1 2 23 740 762 739 762 0.91 8 12 0.25 24 6.5 0.0 1 23 840 863 840 863 0.93 9 12 0.051 4.9 8.7 2.6 2 23 913 935 912 935 0.97 10 12 0.069 6.6 8.3 1.7 1 23 1007 1030 1007 1030 0.91 11 12 0.43 41 5.8 1.0 1 21 1082 1102 1082 1103 0.95 12 12 0.0014 0.13 13.6 0.1 3 23 1140 1161 1139 1161 0.96
Sequence Information
- Coding Sequence
- ATGGATGATTTGGAACCATGGAACATGTTTACAAATGACTTTGTAGCTACTGAATCTGATGAAATATTCACAGATGAAATAATGGCAGATTTGCAATTGACCGCAGAATGCGCTGTTCCTTCAACTCAAATGAAAGTAGAGCCCGTGGATAAAGATGAATTTGACGATAACAAAGGTAATATACACGCTAACACTAATGGTAGTTATGCTATATCAGTATTAAAACAAGAACAAGAGAGCCCTTCCCTACAAACCACGACAGAAAATGTCGATTACCGAGACGTAGATGAGGTGGATGATGATAGCGTTATATTCAATTTTGACATGGaatcaaaaaagcaaaaaaacatgGATAAAACAGACATCAACactattaaatttaaaagtgtTAATGATGTATCCGCCTCaacgaaaaattataaaagtgttCAGAATAATTTAAGTAATGCACAAGTTGATTACGAAAGTGCTGTCGTTTACATTTGCCCTGCCTGTGGGTCAGAATTCAGTACACAAAATACTTGGAAGCGTCACATGAATTCCGTGCATAACTATAATACGCGCCGTGGTCTAAACTTCATACAAATCGATAAACTGTACCATGAATGTCTAGAGTGCCACAAACGAATAGCAATGCATGCCATGGAGAACCTATTGAAGCATAAATTCACGCATTTGCCATACCGTTGCACCAAATGTAAAGTTTGCTTGCGACAGTATAAGTACCGTCAGGATCTGATGGTACATTTACGTATGAATCACCGTGAAGATATAATATCTATAactagaaatgaaaaattatctgAGAAACGTTTCAGAAGCAGGAATACAAGCGAAATAGTTAACGTTATTGGTAGGAATTCTGATGGTAATGTAATTGAAGGCATTGAAGGCAATCAAATAGTTTCATTAGGACGTTTAGAAATCAAGGATATAAAAGAAAATGCAGTTGACATTTTTGAAAACACGGTAGATTCGATAGAagtgaaaaatgaatttattgagCCAGACGATGATGAACCAGATATTGAAGCATTGGTTGAGCAAACAAGTAGCTCATTTGTGTTACCACACTTTTTGGAAGATGCTCTCAGTCGTAGTTCATCGCAAATATCAGACCGCGCTGTTGGATCTGGCGATGTTGGTGGTGGCGAAGAAGTACTCTGcgaaaaacacatacaatacatatgtccACAATGTGGGGCTGAATATGGGACACAGTTCCAATGGCGCCAACATATTGAGCAAGCACACGATTTTGGTACTCGCCGCGGACTTAATTTTCAGGAGATCAATATGAATCAGCATGCACAATGTTTAGAATGTAATAAAGTCATATATGTGAATGTTATACCCaatttacaatttcataaatttacacATTTGCCACATAAGTCTTGGCTGCGCTGTAAGCTTTGTTTTCGTGCTTGCGTCGGTTATAAAGAGATTGTTAAACATTTATTGAAACAACATCGTTTGGGTAATGAGGATAAACAAGCCGACGAAAGTGAAGATGTACCCGAATTTAGCAGTTcattttttgatgattttgacAACGGCGGTTATGATAATGATGGTCAACAATCACCGAAGAGTGATGAACGCGATATTTACGAACAACATATTGATTATTTGTGCCCACAATGCGGCAAGGAATTTATAGACAAGAAGAATTGGCGTAAACACATAGTTAAAATGCATCATCTAACTAATTTACAAGTGCTCAACTTTAAGGTGCTCAACGATCGTCAGGTAAAGTGCCTGGAATGTCTAAAAGTTATCACAAATGCATATGGAATCCAAAATGCACAGCAACATAGATTTACACACATGCCATTTAAAGCATTTATACGTTGTTGCCTCTGCAAAAAAGCGTACACAGATAGGAAGGGTTTAGTGAAGCATCTAAATTCTAAGCACCGTATTGGAAGAATAATGTCTCATAATTCATATAATCCCAAAAGCACCAACACTTCGCCGAGCCGTTCAACGTTATCGTTACAGCGTCAACCTTACAAACATCCGCAAAAGGAAATTGTTAAGCATGCCAACTTCACctttgaaatacaatatttggatGATGTTGACGATGACGATAATGTTAGCGTTGACAATGATAGTAATACCAATCTTAGTGATGACAATCAATTGTTATTAGGTGATATGGCACTACCGGAGCTAGGTTCCAGTCGCAACTTTGTGCAGCAATCACGTTGGAAATGTGAAGGTTGtgtttcaacatttccaacgcaGGCCGCATTGCACGACCATGTTGCTGAAGAGCATCCTTTTCTTGCTTACAGTTATCGTAAGCCATTGCCAGAAGTATTATCTACGAAAACACAATCTCGCGATCATGTTAGATCACTCAGCAATGTCTTGCACTCTGTGTCACAACATAACGAAGAATCAAAAGAATCAAATGATATTGATGATTCTTTGCTTATACCTACTGGTAACGAAGACGTAAGCTTTAACTCGACACAAGATTCTGCTCAAATTGAACGCAATTTTTGTTATCTTTGCCCTGCgtgtggacttgaatataaagCGCAAGTGGAATGGCGTAATCACATTAATGAAGCTCACAAGTTTGATAATAGACATTCGCTCAATTTTCGACAAATCGACAAATTTCGTTTCCAGTGCATTGAATGCAATGATATTGTCTCAAGCTCAAAGTTGAAGGGTTTGCAAGATCACAAATTCCGACATTTACCATATAAGCTCTATATAAAGTGTCTCATCTGTAGCGTATGTTATAATCATAAACCGAACATTATAAGCCATTTGCGTATGCGCCACAATATTGTAGATGTGCGCTCATCACCTATTTCACCAAATAACAGCGAGCGTTTGGATTATGAATACGACATTCAGCATGAGGAAACATTTCCAAGATCGGCAACATCAAAGCCGACTATAGCTTCGGGCACATACGGCAAACCACCGCCTGGATTAAGAACAGTCGAAGATTGCATATCCTTCCATAACGCGGTTGATCATGAGTCGATAACTTATTTTTGCCCACAATGCAACGAGCCATTTCATACGCATGTCTTCTGGCGTAAACATATTGTTGAAGCACATAATCTCAATAGTTGCCAGGGCCTGAATTTTCGACAACTCGATAATCATCATTACTTATGTTTGCAGTGTTACAAGCGTGTCACAGTGACGCATACCAAAGGCGCCATAGGTCAGCTGCAGTCGCATAAATTCCGCCATCTTCCCTACAAGTCGTTTAAATGTCTTGCTTGCAACGGAGAATTTGTACGTAAGCAAATGTTTTTTAAGCACTTAAATAAAAAGACAAATCGATGTGACAATCCGATCTATGATGTTGAAGATGAAGACTACAACGACCAAGATATTGAAAACCTACTAGTCATGActcaaaattcatttattcttcTTTGTCCAGAATGTGGTGAGACATTTGATTCATGGCACCCTTGGCGTATACACATTAATGAATATCACAAGTTGGGAAGGCGTGAGCTTTTGAATTTCAAGCGCATCAACGGTCTTCTTCACGAGTGTTTAGAGTGTAATGAGCAAGTGGATGACAATATGAAAAATCATCTGCAGCAGAAGCACCCAGATGTAGCGGTGGAAGCATCTGATTGCACAAAAATTGATGAGCTGCAAAAATTTGAACCAGCGTCTATGCTGTCAGATAATGTGAATTATGTAGAACAGCAGGAGGAACAATAG
- Protein Sequence
- MDDLEPWNMFTNDFVATESDEIFTDEIMADLQLTAECAVPSTQMKVEPVDKDEFDDNKGNIHANTNGSYAISVLKQEQESPSLQTTTENVDYRDVDEVDDDSVIFNFDMESKKQKNMDKTDINTIKFKSVNDVSASTKNYKSVQNNLSNAQVDYESAVVYICPACGSEFSTQNTWKRHMNSVHNYNTRRGLNFIQIDKLYHECLECHKRIAMHAMENLLKHKFTHLPYRCTKCKVCLRQYKYRQDLMVHLRMNHREDIISITRNEKLSEKRFRSRNTSEIVNVIGRNSDGNVIEGIEGNQIVSLGRLEIKDIKENAVDIFENTVDSIEVKNEFIEPDDDEPDIEALVEQTSSSFVLPHFLEDALSRSSSQISDRAVGSGDVGGGEEVLCEKHIQYICPQCGAEYGTQFQWRQHIEQAHDFGTRRGLNFQEINMNQHAQCLECNKVIYVNVIPNLQFHKFTHLPHKSWLRCKLCFRACVGYKEIVKHLLKQHRLGNEDKQADESEDVPEFSSSFFDDFDNGGYDNDGQQSPKSDERDIYEQHIDYLCPQCGKEFIDKKNWRKHIVKMHHLTNLQVLNFKVLNDRQVKCLECLKVITNAYGIQNAQQHRFTHMPFKAFIRCCLCKKAYTDRKGLVKHLNSKHRIGRIMSHNSYNPKSTNTSPSRSTLSLQRQPYKHPQKEIVKHANFTFEIQYLDDVDDDDNVSVDNDSNTNLSDDNQLLLGDMALPELGSSRNFVQQSRWKCEGCVSTFPTQAALHDHVAEEHPFLAYSYRKPLPEVLSTKTQSRDHVRSLSNVLHSVSQHNEESKESNDIDDSLLIPTGNEDVSFNSTQDSAQIERNFCYLCPACGLEYKAQVEWRNHINEAHKFDNRHSLNFRQIDKFRFQCIECNDIVSSSKLKGLQDHKFRHLPYKLYIKCLICSVCYNHKPNIISHLRMRHNIVDVRSSPISPNNSERLDYEYDIQHEETFPRSATSKPTIASGTYGKPPPGLRTVEDCISFHNAVDHESITYFCPQCNEPFHTHVFWRKHIVEAHNLNSCQGLNFRQLDNHHYLCLQCYKRVTVTHTKGAIGQLQSHKFRHLPYKSFKCLACNGEFVRKQMFFKHLNKKTNRCDNPIYDVEDEDYNDQDIENLLVMTQNSFILLCPECGETFDSWHPWRIHINEYHKLGRRELLNFKRINGLLHECLECNEQVDDNMKNHLQQKHPDVAVEASDCTKIDELQKFEPASMLSDNVNYVEQQEEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -