Basic Information

Insect: Megamerina dolium
Gene Symbol: -
Assembly: GCA_963854835.1
Location: OY978527.1:44954912-44957717[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.11 11 7.6 3.9 2 23 212 234 211 234 0.94

2 10 0.55 53 5.5 2.6 6 23 244 261 244 261 0.99

3 10 8.1e-05 0.0077 17.5 1.8 1 23 267 290 267 290 0.98

4 10 0.00019 0.018 16.4 2.8 1 23 298 320 298 320 0.97

5 10 4.3e-05 0.0042 18.4 0.3 1 23 327 350 327 350 0.97

6 10 0.00011 0.011 17.0 0.8 2 23 357 378 356 378 0.96

7 10 0.02 1.9 10.0 2.8 2 23 387 408 386 409 0.94

8 10 0.009 0.86 11.1 0.2 1 23 415 438 415 438 0.95

9 10 1.4e-05 0.0013 20.0 0.3 1 23 444 466 444 466 0.99

10 10 8.5e-05 0.0081 17.5 6.2 1 23 472 495 472 495 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.11	11	7.6	3.9	2	23	212	234	211	234	0.94
2	10	0.55	53	5.5	2.6	6	23	244	261	244	261	0.99
3	10	8.1e-05	0.0077	17.5	1.8	1	23	267	290	267	290	0.98
4	10	0.00019	0.018	16.4	2.8	1	23	298	320	298	320	0.97
5	10	4.3e-05	0.0042	18.4	0.3	1	23	327	350	327	350	0.97
6	10	0.00011	0.011	17.0	0.8	2	23	357	378	356	378	0.96
7	10	0.02	1.9	10.0	2.8	2	23	387	408	386	409	0.94
8	10	0.009	0.86	11.1	0.2	1	23	415	438	415	438	0.95
9	10	1.4e-05	0.0013	20.0	0.3	1	23	444	466	444	466	0.99
10	10	8.5e-05	0.0081	17.5	6.2	1	23	472	495	472	495	0.97

Sequence Information

Coding Sequence: ATGATTTGTTCGTTATGTTGCAGGGAATGTATAAAGTGCAAAAATTTGTTCAACACCGACGGCGGAAGAAGTGCCATTTACTTAGTGGCCGTGAAATACTTTGCGGAGCAGTTACGCGATCTGGATATAAGCAATATGACACAGTTCAGCTCTAGAGTAATATGTGATGATTGCTGGATTCATATAACAGAGTTTCATAAATTTCGCGAAATGATTTTGGTAACGCGAGAAGAATATACCAAGTTGATGGGATTTGAAGAAGTCAAGGAAGAGATGGATTTTGATTTGACATCGCCATTATGTGATTTAAAGGAGGAATTTGACCCCGtggaaataatagaaaaagtagAAATACCGCAAATAACAAAGTgcatttttgaagataataGCAGTGACAGATCACAAAAAGATTTAGATTTTAGTTCTGACGATGATATACCACTTTTGAGTAGGATATCAAAAAGAACTACAAAAAGGGCACCAAATGAAAAAGACGATCATATAAATAAGTGCATAGACGGAGCTAGTAAGAAAAGTAATAAAGCGAAAAAAATGTGTTCTTCAAATGGTAAACGAGATTTAAAAGCCTCACAGTTGGATGATTTTATTGCAGAACAATTGAAAGGTGAGTTGCATTGTGGGATTTGCGAGTACAACTGTAAGAACTTCAGAGCTTTGCAAAAGCATTTTCGTGAAGAGCACAACAATGACAAAGCATATGTTTTGTGCTGTCAACGCAAGTTTTTTCACCGGATATATTTTGCTGAACACCTCCGAACACATATTGATCCTGACTACTTTAAGTGTACAATTTGCGGCAAATGCAGTTTAAACCGTCGCACGCTTGCAGTACACATGAGGACTGCACATGAAGAACCATTAGAAAAAAAGTTTGAGTGTGAAATTTGCAACAAACGTTTTACAAAGAAATGTGTCCTGAAAGCGCATAAGGAGATTCATATTGAGGGAAGCAAGGATTATGTTTGCGACTATTGCAACAAAGgGTTTGTTTTACAGTCTCGTCTTAATATTCATGTTCGAAATGTCCACAATAAAACCAACAGCAGTGTCTGCGAATTGTGTGGAAAGTCATGTAGGAATCCATACGTCCTTAAACAACACTTACTTCTGCATGAAGGCGTCGAAAAAAAGAAATGGCCTTGTGATCAATGCGATGCTCAACTCCATTCAAAGTATAGTCTGAGACGGCATAAGCGAGCGCATCACGATGGTAGTACTGCATATGTATGCAGCGATTGTGGTAAAGTAGCCCTAACCGAAGATGCGCTGCGAAGCCATAAAAAATACATGCACGAAACAGAACGAAAGTACAAGTGCAACATATGTGATAAGGCTTTTAAAGTTGCACTCGTATTGAAGGAGCATATGACGACACACACTGGTATGCATCTTTATAGTTGTCCACATTGTCCAAAAACATTTAAAGTGAATGCCAATATGCACCATCATCGAAAACGTGTCCACCGAAAAGAATTTGATCTTACTCGCCAACGACGAATATTAACATCACAAGCCGACCTTAGTTTAGTTTCCAATGAAGTCAGACTGTAA
Protein Sequence: MICSLCCRECIKCKNLFNTDGGRSAIYLVAVKYFAEQLRDLDISNMTQFSSRVICDDCWIHITEFHKFREMILVTREEYTKLMGFEEVKEEMDFDLTSPLCDLKEEFDPVEIIEKVEIPQITKCIFEDNSSDRSQKDLDFSSDDDIPLLSRISKRTTKRAPNEKDDHINKCIDGASKKSNKAKKMCSSNGKRDLKASQLDDFIAEQLKGELHCGICEYNCKNFRALQKHFREEHNNDKAYVLCCQRKFFHRIYFAEHLRTHIDPDYFKCTICGKCSLNRRTLAVHMRTAHEEPLEKKFECEICNKRFTKKCVLKAHKEIHIEGSKDYVCDYCNKGFVLQSRLNIHVRNVHNKTNSSVCELCGKSCRNPYVLKQHLLLHEGVEKKKWPCDQCDAQLHSKYSLRRHKRAHHDGSTAYVCSDCGKVALTEDALRSHKKYMHETERKYKCNICDKAFKVALVLKEHMTTHTGMHLYSCPHCPKTFKVNANMHHHRKRVHRKEFDLTRQRRILTSQADLSLVSNEVRL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -