Basic Information

Insect: Megamerina dolium
Gene Symbol: Sry-delta
Assembly: GCA_963854835.1
Location: OY978526.1:74062173-74063345[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00014 0.014 16.7 0.2 2 23 165 187 164 187 0.93

2 7 9.8e-05 0.0094 17.3 0.1 1 23 192 214 192 214 0.99

3 7 5e-05 0.0048 18.2 3.0 2 23 221 242 221 242 0.97

4 7 0.00027 0.025 15.9 1.2 1 23 248 270 248 270 0.98

5 7 0.00023 0.022 16.1 2.4 2 23 278 299 277 299 0.95

6 7 9.6e-05 0.0092 17.3 7.6 1 23 306 328 306 328 0.97

7 7 0.0081 0.77 11.2 0.7 2 21 361 380 360 383 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00014	0.014	16.7	0.2	2	23	165	187	164	187	0.93
2	7	9.8e-05	0.0094	17.3	0.1	1	23	192	214	192	214	0.99
3	7	5e-05	0.0048	18.2	3.0	2	23	221	242	221	242	0.97
4	7	0.00027	0.025	15.9	1.2	1	23	248	270	248	270	0.98
5	7	0.00023	0.022	16.1	2.4	2	23	278	299	277	299	0.95
6	7	9.6e-05	0.0092	17.3	7.6	1	23	306	328	306	328	0.97
7	7	0.0081	0.77	11.2	0.7	2	21	361	380	360	383	0.93

Sequence Information

Coding Sequence: ATGTCGACGGAACGTTGTTTTATGTGTGCAAAATCTAACTATGATGATGAATTGAAATTTGTGGCCATCGATTCGTGCAAAGTACCCGCATCGCAAAAGCATATAACATCAGTACTACAACATTTGGCCAATTGCATAAAAACGAAACTGATATTTCAACCGGGAGCTGCCATTTGTTCGGAGTGCTACAGAGAATTAACTGAATACGATGAATTAATGCTTAATCTTTTAACATTTCAAAAGCGATtgacacaaaagctcaaagacGTTATATCGACGAAATTCGAGATTATTGAAGTCGAGAATGAACTAACACAAATCGAGGAAGATTATCAACTTGCAGATGCAGCAAATCCTGAACTGGACACAAAGGAGGAATTCATAGATACGGATAATGTAATGGAGGAGGTATCTACAGATATTTcagatgatgacaatgatgatatgGACGAAGATGGTTCTTCGACATCAGATAGAAGACGAAACAGACAAGAATGCGTTGTTTGTGGCACTACATTTCGGTCAAAGTTGCTTTTGCAAAATCACATAAGTGAAGTGCATAATACTAAAGTGTATACATGCACTATATGTGGAGCTGTGCGTCGTGATGAAGAATATCTTGAGCTGCATATGAATATACACGAAGGAAAGACTGAAAATGAATGTCGCTTCTGTCCGAAACGTTTCTCACGTCGCGTTAACACACTTCGGCATATGCGTAAGCATTGGGATAAGAAAAAATATCAGTGTGAAAAGTGTGGTGAACGATTTTCATTGGACAACATGCTCTACAATCATCGCATGAGGCATGAGGCAGAGGAAAATCCACTAATCTGCAGTGTTTGCAATCAGTCGTTTAAATCACGAAAAACGTTTAATCACCATGTATTGATTCACCAAGAAAACAGGCCACGCCATCATTGTACAATGTGTTCGAAATCGTTTACAGAGCGTTACACATTAAAAATGCATATGAAAACACACGGAGACACTTACGTGCCTGTGGCTACGCAAGAAGAAGAGTGCAAGGAAGCTGAAGCTGCAGTACACACATTAGTGGGCAATGCCACTAAAGATATAACTTGTGTTATATGCAGCATCAAATTCGAAAACAAAGAAATGTTGGAGCAGCATTTGCAATGCGATCACgatgttattttaaattctgCTTGA
Protein Sequence: MSTERCFMCAKSNYDDELKFVAIDSCKVPASQKHITSVLQHLANCIKTKLIFQPGAAICSECYRELTEYDELMLNLLTFQKRLTQKLKDVISTKFEIIEVENELTQIEEDYQLADAANPELDTKEEFIDTDNVMEEVSTDISDDDNDDMDEDGSSTSDRRRNRQECVVCGTTFRSKLLLQNHISEVHNTKVYTCTICGAVRRDEEYLELHMNIHEGKTENECRFCPKRFSRRVNTLRHMRKHWDKKKYQCEKCGERFSLDNMLYNHRMRHEAEENPLICSVCNQSFKSRKTFNHHVLIHQENRPRHHCTMCSKSFTERYTLKMHMKTHGDTYVPVATQEEECKEAEAAVHTLVGNATKDITCVICSIKFENKEMLEQHLQCDHDVILNSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -