Mdol017525.1
Basic Information
- Insect
- Megamerina dolium
- Gene Symbol
- RREB1
- Assembly
- GCA_963854835.1
- Location
- OY978527.1:73454528-73460675[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0084 0.81 11.2 1.3 1 21 260 280 260 282 0.96 2 14 0.00048 0.046 15.1 0.2 1 23 292 314 292 314 0.98 3 14 3.4e-05 0.0032 18.7 7.5 1 23 320 342 320 342 0.98 4 14 0.085 8.1 8.0 4.3 2 23 610 631 610 631 0.91 5 14 1.1 1.1e+02 4.5 0.5 1 19 673 691 673 694 0.86 6 14 0.012 1.2 10.7 0.1 1 23 853 875 853 875 0.97 7 14 2.8e-05 0.0027 19.0 1.2 1 23 885 907 885 907 0.99 8 14 0.0012 0.11 13.8 2.0 1 23 913 936 913 936 0.97 9 14 0.0038 0.37 12.3 2.8 1 23 1280 1303 1280 1303 0.96 10 14 0.00012 0.012 16.9 0.3 2 23 1617 1638 1616 1638 0.97 11 14 0.21 20 6.8 6.3 1 23 1644 1667 1644 1667 0.97 12 14 7.2 6.9e+02 1.9 7.7 1 23 1779 1802 1779 1802 0.96 13 14 0.012 1.2 10.7 0.5 3 23 1855 1875 1853 1875 0.96 14 14 0.002 0.19 13.1 4.8 1 23 1881 1903 1881 1903 0.99
Sequence Information
- Coding Sequence
- ATGCTAACAGCAGAAGCTACAACGACGAAGCAAACGCTAGAGGATAGTCATTCAATCAAGTCAGTCAAAATGGAACGTCGCGATTCCACAACATCAGAATCTTCCCTTGAACATTTAGAGCTTGGACACACGCCAAAGAAATTCACTTCACAATCACAATCACTCACTTCGACGCCACATGTGACATATGCCGTCAATGGTCATAGAAATAGTAATTATCAGAATAACAGCAAAAACACGAAATTAGTCGAAATACCGACTTACCCAGCAAATTCTgttaatttagaaaataaatcaTCATTGTCTCAGTTTCAACAACGCATACATGATTCAGATGAAGCTAATGACTACGATGAGGAAGAATCGGCTGATGAGAAACAAAACTTGTCCCGCGCTCAGCGTCATCATAAGAGACGCAGTAGCATGCGACTAGATAAACGCACTAACGTACAATTAGAGTATAATACAGATAACCCAAATTCCCTAAGAAAGAAATTTCGTTTTAGTCGAAGTGGCTCTGATCTGGGCACCCACCCAACAAACTCGTTAACAAACAATGAATCTGGCTTCATCGATGCCAGTTCGAACAGTCAATACTTAAATGCTTCAGCCGCATCCGTTTCGACTTCGCAACCACAGCAACAAGCAATATCACAATCATCCATTGCTCCAGCATCACACAGTTCATCATCAGCTTCATCATCGCCACATGGTGGAGAAGCTACATCCTCCATTTCCAGTCCTGAGTCCGGCATCGGTGAGCGTGAggatatgaaatatgtatgtccCATTTGCGAATTTGTTTCTGCCACGCCGCACGACTTCACTAATCACATTCGATGTCATAATTATGCTTCAGGTGATACGGAAAATTTTACTTGCCGCATTTGCTCAAAAGTTCTTTCATCTGCATCGTCATTAGACCGCCACGTACTTGTACATACCGGCGAACGGCCTTTTAATTGCAAATACTGTCACCTTACATTCACAACAAATGGCAACATGCATCGTCACATGCGTACTCACAAACAGCATcagcataatcatcatcatcgccgcAACTCGAATGGAAccaaaaataatagcaacagctttaatcataataataacaacagcagcaccacTGCCATACCATCCACGCAAGCAACACCTGTCAACATTACCAACAGCAGTACGACTGCGCAATTACCCAACGGAGTTGGTGAAGGTGCTGAACCTGCGACAGTGACTATAtcatcaacaccaacaacaagaacagcatcagcatcaacaaAAGCATTGCCTTTACATGTTACGGCAACAAACACAACGGAAtccacaaatatatctgcaggTGCCAATAGGAAACGTTTAGTTGGTAGTGGTGTAGAAAGTTACGAAAGCGATGGTGGTTGTTCAACGGATTCATCAAGTGCCATCAGCCAAGGCGTCAAAATGCAGAAAAtaactaacaacaataacaccaacaaaaacaataatgaaagtaatagtcaaaatacaatttatggaAACGACACGAACGATAtcgaaaataaaccaaaaagcAGCAACGTGAGCAGTTTTAAACGCAAATATAGTGATCATCTCGACGTTAATGATACTTCATTGATGAAGCAGCGCGTAAAGACTACTATTAATAACAACATAATTGGTGCCAGCAATGACAACAATCCCACCGCCCATATAGAAGTTATGTCTCCGGCAAAATCTGCTTTCAGTGAACTAGAATTAAGCGGTATTGTATGTCCTATCTGCAATGCGACTGATTTTGACAACATGTTATCTCTTGGCTCACATATGGATAGCGAGCATTCAGATATAGCAGCAAAGTGCCGTTATTGCGATGTTGTTTTTCGCACTCATAGACAACTGAACGTACATCCCTGCACACATAAACCGAATATGTCGTCCGTATTTAAGGATATTGTTTGCGTTGATTTCTCTAGCGACAAGTTTCCACTCATCGCAAAATCATTGAGCGAACAATCTGTCGGAGCAAATGCTACAAGTCAGGGCTTTGAATGCAAAAAATGCTTCCGCGTATTTCCTTGTACCAGTGCATTGGCAATACATGCTCAAGAATgtgaaaatacattaaatattttgaagccATCTGAAGACTGCACCATCTTTCAAGCGTCGAAACAacccaacaacagcaacagttcAACCGAAGCCGAAGAAGAATTCATCGATGAGGAACAACAACGAAATGAGTTTTTCCGTcgtttgtatttgaaaaataagtcACTCCATTCGCAGAGCATGAGTTCTTTGCCATCTTCACAACATTCCAACGATGAGCCATTGGACGAAATTAAGTTGGAATTAGATGGTGAACGAAATGTGTTATCTGCACAATCGCATGATTCGAAAGACCTCGCTGATATTCAATCAATTTTGAATATGACGTCTTCATCGTCGACTTCCAATTTTTTAAGAAACTTCGAGCAGTCTGTAAACACACCATCTAGTAATTATAGTCTAGATAAGGACGAAGAGGAAGCACAAGACGCCTTCACGTCAGAATTCCGTAAAATGAAGTTGCGTGGCGAATTTCCCTGTAAGTTATGTACTGCCGTGTTTCCAAATCTGCGTGCTCTTAAAGGGCATAATCGAGTTCATTTGAGTGCTGTCGGTGCAAATGGACCTTTTCGCTGTAACATGTGCCCATACTCCATTTGCGATAAGGCAGCCCTTGTACGACACATGCGCACACATAATGGCGATCGTCCATACGAATGCGCTGTCTGCAATTATGCATTTACCACCAAAGCAAATTGTGAACGTCATTTGCGTAATCGTCACGAAAAAACTACACGAGATGAAGTTAAACGCGCGATTATATATCACCCATCCGAAGACTCTACATGCGACGACTCAACAAAGAAATTGCATATGTTTTCATCACCAGATTTTGACGACGACCCACTTTACCAACATAATCATCCTAAAGATCGTTCAACTCCAGTATCTCACTTAAAAGAAATGCTCACGAGTGAAAACTTATCAACAAAGCCAATGAAAATACAAGTGAAAAGTCTGGAGCAATTATTGGATAAATCGAACACATCCTCCAACTGTATCTCAAAATACGATGATCGAAACGAACTAGTAGAATCAACTTTAGAAATTGCACCAATTGACTTGAGCATGGATGCTTTAGATTTGAGCAAAAAGCCCTCCAATACAGTGCCTAATAGCGAAACCTCTCAAACACAAGCAGTCACACAAGTATCTACTGCGAAATCTGTCACTGGGGGCGATAACGTCCATAATGCAAAACCTTTCGATGACTCAAAATTGAATTTaccaaatttggaaaaaagcCAACATTTATTCCtagcacaacaacaactaatgaaTGAATCGATTCCAAAAATTGTTGATCCAGCACATTACTTTCAGCAATTGTACCGAAACATTATGTTTCCAGCAATTAATCCCTTTTTACTACGTAACTCACTTATGCCAAATAATCTAAGTGATTTGCAGAAATTAGCTCCGCTCATGAGCCGAATTTTTAGTGTTGCTTCATTGCAAACAATCGATGCTACCGAGGACGATATCTCTGCTAACTCTGCATCCGAAATGTTCCCACGAGTTAGTCCTCTCATACCTGAAAAGTGCAACATTCCTATAATTGCTTCTACACCCCCAAGTCAAGTACTATCCAAAAACTTAGCACCTGCAACAACACTAAATAATTCACTTAGTGCTCCAAGACACCAGCATATGACACCAACTGTGCTCCCAGGTGGGCCAGTTAAAATGGTAATAAAAAATGGCGTCCTCATGcctaaacaaaaacaacgtcgctACCGGACGGAACGTCCGTTCTCTTGTGATCATTGTTCTGCACGTTTTACCTTACGTTCGAACATGGAGCGTCATGTGAAGCAACAACACCCACAATTCTACGCTCAACGCCAGCGCAGTGGTCATCATATCATCCGCGGACGTGGTGCCAGCAATAGCGCAGCAATGAACAGTATACCTCATTTGCAGGCTGCTTTTGTGCAGTCTCACAACAACGGTAACAGTGTGAGTCCTACGCCAATATCCGAACAAGTAAAATATGCTATTCTAGCTCAACAGTTAAAAGCTCGAAAAGACACAGATTTGCTGCAACAAGCTTTAGCGCATGGTTCGAGTGGTGTTGTGCCCAACCAGATGATTCTTAATACTCTGGGCGGTGCTAACACCTCAACACTTTCAAATGGCCAGCAGTTCAGCTTTAATCAATTGAACACTGCTACCATTCAATCAATGGAAGATGATGAACCCAAATTAATTATTGATGAGGATAAGGACAACGATGTTGAAGAAGTTCTAGAcgagaaagaaaataatttaaacgcAAGTACAACGGAAGAGCAATTAGAGCAACCAAAGGAAAAAGAAATTCTAAATACAATCGAATCGAATGACGCTGCTAAAAAAGTAGCCGAAACCATACTCGAACAAGTAATAaaagcaggcaaaaaaagtaaCGTTCTAACTAAACCTGATGTCACTGCTCCTGCAGCTAACACTATGAATTCAATGATCGCTCAAGCAGAATCGGTTGGAAAATCTCTTAAAGAAGTAGCTAGCTCATCGTTTAAGGACGAATCGCAGGATTTAGTGCCGGTTTCCAAATTAGTCGACAATGCGACCAGTAATTCAGTATcttttaacaattattttcgaCCAAGTGATGTTGCAAATAATATGGAACAAAGCGATGAAGAAGGGTTAGTGGCTTCGGGTAGCGCCAGTGAAAGCAACAATTCGGGTACAGAAGATATTGCTCCTTCTGCCGAACCTAAGAAAAAATCGGCTTATAGCCTGGCACCAAATCGCGTATCATGTCCTTATTGCCAACGCATGTTTCCTTGGTCAAGTTCTCTGCGACGTCATATACTAACACATACGGGGCAAAAGCCGTTCAAGTGTTCACACTGTCCTCTGCTTTTTACCACAAAAAGCAATTGCGATCGTCATTTGTTGCGCAAGCACGGCAATATAGAGTCAGCGGTTTCCGTATATGTACCCACGGAAGATGTCTCTGAGCCAATACCAGTTCCCAAGTCGGTTGAAGAAATCGAGCAGCAGCAAAAGAAACAACGGCGTGAAGAACAAGAACGCAAACGTAAAGCTGAGGAGGCACAAATTGAGCGTGAACGGCTTGAAAAGGAACGGCTGCTTCACCAACACCAGGAGCAACAATATGAACGAGAGCAGCAATTACTAAAGCAGCTTACTGCCACCACCCAGCTCAATCAGTTTAACGTAGCGCCTGGCACTAGTCCCAAACATGaaggaaatttaatttcatcCTCGGAGCTGCCATTCAAATGCCATTTGTGTGAAAATTCCTTTTGTGATCGCTTTCAATGCTTGGAACATATTAAAATCCAACATTCACAAGAATTTTCTCTATTACTGTCAAAGGGAGCTATCGACACTGACGCCGAACCTAATCATACAAACAATATCGAAGAGGAAGACCGACGCCCAAATGAAGAAAGTAATTCCTCACGTGGCAAATACCCCGATTACAGCAATCGGAAAGTAATATGTGCTTTCTGCGTACGCCGTTTTTGGTCAACAGAAGATTTGAGACGACATATGCGTACCCACTCTGGTGAACGGCCATTTCAATGTGACATATGTCTTCGAAAATTCACTCTAAAACACAGTATGCTGCGACACATGAAAAAGCACAACGGACGccaccacaataataataactccGGCGATATGTCAGCTGCTGGAAACAGTGGCTCAGATTTCTCTGATGACGAACAATCAAATGCGCCTACCGCAACTTCTCCTCCAGCAAACTTGATAAGTAATACGTTAAATTTACGTGTATCCAAAATACAAGAGCTGCTGACTAAAGCAAGTGAATGGCGCACAAGTCGGCTTTCATCACTGGGGGGCGAACAAAAGGAGAACATAGCCGAGGAGCATAACCATCCGACCGATTTAATTGGAAATCTCTTGGGTATCAGCGATCAAGGCATATTAAATAAGCTTCTCTCATCAGCAGATGAAGCAGCCAAGTTATTGGGTGTCGATAAGTAG
- Protein Sequence
- MLTAEATTTKQTLEDSHSIKSVKMERRDSTTSESSLEHLELGHTPKKFTSQSQSLTSTPHVTYAVNGHRNSNYQNNSKNTKLVEIPTYPANSVNLENKSSLSQFQQRIHDSDEANDYDEEESADEKQNLSRAQRHHKRRSSMRLDKRTNVQLEYNTDNPNSLRKKFRFSRSGSDLGTHPTNSLTNNESGFIDASSNSQYLNASAASVSTSQPQQQAISQSSIAPASHSSSSASSSPHGGEATSSISSPESGIGEREDMKYVCPICEFVSATPHDFTNHIRCHNYASGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQHNHHHRRNSNGTKNNSNSFNHNNNNSSTTAIPSTQATPVNITNSSTTAQLPNGVGEGAEPATVTISSTPTTRTASASTKALPLHVTATNTTESTNISAGANRKRLVGSGVESYESDGGCSTDSSSAISQGVKMQKITNNNNTNKNNNESNSQNTIYGNDTNDIENKPKSSNVSSFKRKYSDHLDVNDTSLMKQRVKTTINNNIIGASNDNNPTAHIEVMSPAKSAFSELELSGIVCPICNATDFDNMLSLGSHMDSEHSDIAAKCRYCDVVFRTHRQLNVHPCTHKPNMSSVFKDIVCVDFSSDKFPLIAKSLSEQSVGANATSQGFECKKCFRVFPCTSALAIHAQECENTLNILKPSEDCTIFQASKQPNNSNSSTEAEEEFIDEEQQRNEFFRRLYLKNKSLHSQSMSSLPSSQHSNDEPLDEIKLELDGERNVLSAQSHDSKDLADIQSILNMTSSSSTSNFLRNFEQSVNTPSSNYSLDKDEEEAQDAFTSEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRVHLSAVGANGPFRCNMCPYSICDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHEKTTRDEVKRAIIYHPSEDSTCDDSTKKLHMFSSPDFDDDPLYQHNHPKDRSTPVSHLKEMLTSENLSTKPMKIQVKSLEQLLDKSNTSSNCISKYDDRNELVESTLEIAPIDLSMDALDLSKKPSNTVPNSETSQTQAVTQVSTAKSVTGGDNVHNAKPFDDSKLNLPNLEKSQHLFLAQQQLMNESIPKIVDPAHYFQQLYRNIMFPAINPFLLRNSLMPNNLSDLQKLAPLMSRIFSVASLQTIDATEDDISANSASEMFPRVSPLIPEKCNIPIIASTPPSQVLSKNLAPATTLNNSLSAPRHQHMTPTVLPGGPVKMVIKNGVLMPKQKQRRYRTERPFSCDHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHIIRGRGASNSAAMNSIPHLQAAFVQSHNNGNSVSPTPISEQVKYAILAQQLKARKDTDLLQQALAHGSSGVVPNQMILNTLGGANTSTLSNGQQFSFNQLNTATIQSMEDDEPKLIIDEDKDNDVEEVLDEKENNLNASTTEEQLEQPKEKEILNTIESNDAAKKVAETILEQVIKAGKKSNVLTKPDVTAPAANTMNSMIAQAESVGKSLKEVASSSFKDESQDLVPVSKLVDNATSNSVSFNNYFRPSDVANNMEQSDEEGLVASGSASESNNSGTEDIAPSAEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNIESAVSVYVPTEDVSEPIPVPKSVEEIEQQQKKQRREEQERKRKAEEAQIERERLEKERLLHQHQEQQYEREQQLLKQLTATTQLNQFNVAPGTSPKHEGNLISSSELPFKCHLCENSFCDRFQCLEHIKIQHSQEFSLLLSKGAIDTDAEPNHTNNIEEEDRRPNEESNSSRGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDICLRKFTLKHSMLRHMKKHNGRHHNNNNSGDMSAAGNSGSDFSDDEQSNAPTATSPPANLISNTLNLRVSKIQELLTKASEWRTSRLSSLGGEQKENIAEEHNHPTDLIGNLLGISDQGILNKLLSSADEAAKLLGVDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -