Mdol014367.1
Basic Information
- Insect
- Megamerina dolium
- Gene Symbol
- -
- Assembly
- GCA_963854835.1
- Location
- OY978527.1:18877594-18896537[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.7 5.4e+02 2.3 0.3 11 23 237 249 235 249 0.87 2 11 0.001 0.099 14.0 2.0 1 23 255 278 255 278 0.92 3 11 0.24 23 6.6 0.1 1 13 284 296 284 298 0.90 4 11 2.7e-05 0.0026 19.0 1.1 1 23 399 421 399 421 0.98 5 11 1.6e-05 0.0015 19.7 1.5 1 23 427 449 427 449 0.98 6 11 0.0017 0.16 13.4 3.6 1 23 455 478 455 478 0.97 7 11 1.8e-05 0.0017 19.6 0.2 1 23 484 506 484 506 0.98 8 11 0.0035 0.34 12.3 1.1 1 23 512 534 512 534 0.95 9 11 0.00072 0.069 14.5 2.0 1 23 540 562 540 562 0.96 10 11 8.8e-05 0.0084 17.4 0.3 1 23 568 591 568 591 0.97 11 11 0.21 20 6.8 0.5 2 23 614 636 613 636 0.94
Sequence Information
- Coding Sequence
- ATGTCTAGTATTTACACTATAAAGAAATCGTCAAACAGACGCGGTACGGTACAGTGCGGTATAATCCCGTACGATATGCCGTATCAAATACCATGGCGGTATATGAGAGCACTCAAACAGACGCCGTATTATAGTACTGCTGAAATTCTTGATGATATATGCGAGGATATACAAGACGATTTCAATGATTTAATTGAGCAAGTCGAAGAAAGTTCTGCAGAAGATGAAGTACAACATGAAGAAAAACGATTGGATTATGAATTTGTTGACCTCGGTCGAAAATCGGATAAAAGCCAGCATGACCAACAGACAATTACTAATGTTACGAGAAAACAACTGTCAACGTTACCAGCTATATCAGATGTTTCTATGAAGCCTTTTACAAAAAATGAACAATTGTCAATAACTGAATTGCAAACACCCATAAACCAACTGCATCAAAACACCCTGCTAAAGCACAAAAAAgaaacagttacaacaaaagtAGGATCTAACATAAGTTCAGCAACATCTCATGATGCAAGAAATATTTCATCAACTAAGGTAAATAGTCAAACTATTGAATTGGAAGCAATGATGAAGAAgttgcaagaaaaaatagcagCCATGCGTAAAAAAAAGGCAACAACCCCGGCAAAGGTAATGGCTGTAAAACAGATTGAGGCACCACCAAGAACTAAAATTTCTAAGACGAGAATACCAGTAACTACCACCTTTTCTAGTGTCAATGCACACCAGCGTCGCCACACCGGTATAAAAGATCATGACTGTTCGTTTTGTCCGAAACAATTTTACACCAGCCATGAATTGGAAGCGCATGAGAAGGGTGTTCACACCGGTGAAAGAGATTACATTTGTCCAAAATGCGGATTAGGATTTATAACATCCGGAATTTTAAAGTTCGAGTGTACCATTGAAGAGGTATCGACAGATGAGCTTATTGAAGATCTACGCACGAATGACACTGAAAGAATTGAATACGAAGACCTTGCAACAAATGACAGTAACATTAAAGCAGCATATGATGAGGTTTATCAGGAACTATCTGTTGATATTTTGCACCCTATCGAATCGATCACAGTGCCTGGCATTATTGACATTAAAGAAGAAATTGATATTAATTCAGATTGCAGTACTGAAGAATGGCATACAAAGAAGCGCCGGCGGCAAGAGAGCGTTGATAAGGTTCGATATTTTGAATGTGAATTTTGCGGCCGCAAATTTAACCAAAAAAGTAAATGGCGCTATCACATAATTATTCACAGTGATGAACGAAAACACAAATGCGATCAATGTGGTCAAGCTTTTAAGGCAGATTATAATTTACGGGCTCACTTACGACGTCATTCTGGAGTTAAAGATTATGATTGCGCACATTGTCAGAGAAAATTTCACACCAGCACAGAATTGGCAACACACGAACGGAGGGCACATACTGGTGAACGGCCTTATATATGCACACGTTGTGGTGTTGGCTTTATAACTTCCGGATTATTGCGGGAACATATGAAACGGCATAACAACGAAAAGCTTTTCAAATGCCTATTCTGCGATAAAACTTTTTACAATCCGCAGTTGCGAAAAGATCACGAAATTGTGCACACGAAGGAACGCAATCACATCTGCAGTGTGTGTCATGCTACTTTTGGACGCCGGAAAGGATTATTAGTGCATATGAAATTGCATGAGAATGCGCGCGAATATGCTTGTGATCTTTGCGATGCGGCCTTCAACCAAAAACAGTCCTTAATAGCACACAAGAAAACTAAACACAGAATACTCAGTACTGGTAAGATAACGGTTTTACCACAAATAAGCGCAATTGTGGAAGGAAATACAACATGCAcacaatgtaaaatgaaatttccAAATGTAGTTTCCATGCTTGAACATGAACAGAGAATGCATGCTGCACAACAAGAGGTTATATTAAATATagcataa
- Protein Sequence
- MSSIYTIKKSSNRRGTVQCGIIPYDMPYQIPWRYMRALKQTPYYSTAEILDDICEDIQDDFNDLIEQVEESSAEDEVQHEEKRLDYEFVDLGRKSDKSQHDQQTITNVTRKQLSTLPAISDVSMKPFTKNEQLSITELQTPINQLHQNTLLKHKKETVTTKVGSNISSATSHDARNISSTKVNSQTIELEAMMKKLQEKIAAMRKKKATTPAKVMAVKQIEAPPRTKISKTRIPVTTTFSSVNAHQRRHTGIKDHDCSFCPKQFYTSHELEAHEKGVHTGERDYICPKCGLGFITSGILKFECTIEEVSTDELIEDLRTNDTERIEYEDLATNDSNIKAAYDEVYQELSVDILHPIESITVPGIIDIKEEIDINSDCSTEEWHTKKRRRQESVDKVRYFECEFCGRKFNQKSKWRYHIIIHSDERKHKCDQCGQAFKADYNLRAHLRRHSGVKDYDCAHCQRKFHTSTELATHERRAHTGERPYICTRCGVGFITSGLLREHMKRHNNEKLFKCLFCDKTFYNPQLRKDHEIVHTKERNHICSVCHATFGRRKGLLVHMKLHENAREYACDLCDAAFNQKQSLIAHKKTKHRILSTGKITVLPQISAIVEGNTTCTQCKMKFPNVVSMLEHEQRMHAAQQEVILNIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -