Basic Information

Insect: Megamerina dolium
Gene Symbol: -
Assembly: GCA_963854835.1
Location: OY978529.1:10903871-10906214[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 9.7e-05 0.0093 17.3 0.4 1 23 232 254 232 254 0.97

2 7 0.0019 0.18 13.2 3.0 1 23 500 522 500 522 0.95

3 7 1.5e-05 0.0015 19.8 2.3 1 23 528 550 528 550 0.98

4 7 2.6e-05 0.0025 19.1 0.7 1 23 556 579 556 579 0.96

5 7 1.2e-06 0.00011 23.3 2.5 1 23 585 607 585 607 0.98

6 7 3.4e-06 0.00033 21.8 1.4 1 23 613 635 613 635 0.99

7 7 2.8e-05 0.0027 19.0 1.4 1 23 641 663 641 663 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	9.7e-05	0.0093	17.3	0.4	1	23	232	254	232	254	0.97
2	7	0.0019	0.18	13.2	3.0	1	23	500	522	500	522	0.95
3	7	1.5e-05	0.0015	19.8	2.3	1	23	528	550	528	550	0.98
4	7	2.6e-05	0.0025	19.1	0.7	1	23	556	579	556	579	0.96
5	7	1.2e-06	0.00011	23.3	2.5	1	23	585	607	585	607	0.98
6	7	3.4e-06	0.00033	21.8	1.4	1	23	613	635	613	635	0.99
7	7	2.8e-05	0.0027	19.0	1.4	1	23	641	663	641	663	0.98

Sequence Information

Coding Sequence: ATGGGCCGAACAATGCAGTCCGCACTTCAAAGCAAGGAGCAGGAATTTATCGATCATTCATTGCTCGCTCCGACTTATATACGggattcaaataattttataatagagCTTATCGATAACCCTGTTGTATTCCCAAAAACTGTAGTGCATACAGAAACGACCTCTGCTGGCGCCTATGATGTGAAGGATACCATCACAACCGATATGCACttccaaaattcaatttttcaccCCGTGGAAACTGTGGCCGTTCAAGATAATGATTCATCATTACGAACAATTGCTCCATCGGCCTTGCAATCAGTTAGTACCGGTAATGAGACAGCATTTGACGAGAAAAATACTTCGAATTTTGGATTGACGCTGAATAACGATTTCTTGAGGACGTCGGATAACAAGTCATTTTGCAATACTACGCCGAAGGCACACTCAAACACAACAGCGACGTATTCTTCCCTTTCTTTACTGACTGAGCCTGCTGTCACATTAAACGAAACGGATGTCATGCATGGTAATGGCGATATATTGTACGCTGCACAATTCAGCAACTCGCGCAAAGTGCTTCCACATAAAAAACGGATATCGAGAAAATTGAAAGTTGATCACAATCTTATCGAGTCTTCAATATCCGCAACAGCATTACAACAACATAAGTTGCCCGAACATGATCTGTCATCTGTCGGCACAGTGCATTTCAGCTGTGAGATATGCGGAAAGTCTACCTCCTCTCAACTTGCATTTTTTGCTCATCTGAAAGAGCACTATGAACCCTCCACGCCTGACACAATTTTGGCAGCAATGAAAACTTCACTAGATGAATTAGGGGGTCCTATAAAGAACTGTGATGCTATATGCTCAATAACAAAaaagGCAGACGAACAAATGTTTCAAGATGTTCAGCTTAATTTCGAGGATTTTCAAAATGTAGAAGAATCTGTGAATTCAAATAGCATAGATAAATGTATCAGTTATGTTACTGATAATGACACCAGACCTTTAAAGGGTATTGTCACAGAAGAGGTGGAATTTAGCGACCCTGAGGATATGCTTGAGGGTATACGAAATGTGGTGGATAAGGTATCAATTGATGACACTTGTGATAGCATTGATCTTATGGGACCCAATGGTATTCGCGCTCCATGGTTTGCCGACGATAATTTTAGTGGTGGAATACCCTATAAAAGTAATACTTTGAGGGAAGTGGCATTCTCTGAATCCATCGCACCGATGTCAATAACTGAAAGCAGAAGTGACATAATGGAAGTGTCCTCTAAACCGCAGTTATCGCTTAACGGCCCAACATCTCCAAAATCAAACGATGAGTCTTACGATAAGTTAGCACATCCTAAAAACGCAAAACTCCAACCAAAATTAAGGAAGATTGCACATCAAAGAAGTATTGTCATTTCAGATGATGAGTGCGATCCAAATGACAGAAGTTGTGAAGAAGAGGACCCTCAATTTGAGGAAAACATGTCTAAAGAGGGAAAAAATAACTACTTTTGCACGAAATGCAATCGCAAATTCAACTCTAGTAATGCATTGAAATATCATTCCGGCACCCACTCTGAAGTTCGTCCACATCAATGTAATCAATGCAGTAAAGCATTTTTCGCACAGAGTGCCCTCAAATCACACATTCGCACGCATACCGGTGATAAGCCTTTCGAATGCGATCAATGTCAAAGAAAATTTCGACAGTGGGGCGATCTTAAGTACCATACAATATCGATACATACCAAGGAGAAAAGCCATCAATGCGAGTTTTGCGGCAAAGCGTTTTCGCGCAAATATTCGTTGGTTTTGCATCGACGTATACACACCAGCGAACGTAATTATAAATGCGAATATTGCCCGAAAACGTTTCGTGCAAGCGTTTACCTGCAGAATCATCGAAAAATTCATACGGGCGAGAAACCTTTCGAATGTAAGGTATGCACAAAGAAGTTTCGCATCTCCGGCGATTTAAGCCGACATAAGCGTGTCCACCAACGTAAATCGATTTCTAGTAAGGCCGAAACGAGTAAAATCAATCATTCTTCATCCCAATTCGGCTCActataa
Protein Sequence: MGRTMQSALQSKEQEFIDHSLLAPTYIRDSNNFIIELIDNPVVFPKTVVHTETTSAGAYDVKDTITTDMHFQNSIFHPVETVAVQDNDSSLRTIAPSALQSVSTGNETAFDEKNTSNFGLTLNNDFLRTSDNKSFCNTTPKAHSNTTATYSSLSLLTEPAVTLNETDVMHGNGDILYAAQFSNSRKVLPHKKRISRKLKVDHNLIESSISATALQQHKLPEHDLSSVGTVHFSCEICGKSTSSQLAFFAHLKEHYEPSTPDTILAAMKTSLDELGGPIKNCDAICSITKKADEQMFQDVQLNFEDFQNVEESVNSNSIDKCISYVTDNDTRPLKGIVTEEVEFSDPEDMLEGIRNVVDKVSIDDTCDSIDLMGPNGIRAPWFADDNFSGGIPYKSNTLREVAFSESIAPMSITESRSDIMEVSSKPQLSLNGPTSPKSNDESYDKLAHPKNAKLQPKLRKIAHQRSIVISDDECDPNDRSCEEEDPQFEENMSKEGKNNYFCTKCNRKFNSSNALKYHSGTHSEVRPHQCNQCSKAFFAQSALKSHIRTHTGDKPFECDQCQRKFRQWGDLKYHTISIHTKEKSHQCEFCGKAFSRKYSLVLHRRIHTSERNYKCEYCPKTFRASVYLQNHRKIHTGEKPFECKVCTKKFRISGDLSRHKRVHQRKSISSKAETSKINHSSSQFGSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -