Mdol007980.1
Basic Information
- Insect
- Megamerina dolium
- Gene Symbol
- -
- Assembly
- GCA_963854835.1
- Location
- OY978525.1:121471401-121474860[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.6 2.5e+02 3.3 2.5 2 23 255 277 254 277 0.94 2 18 0.51 49 5.6 4.4 2 19 317 334 316 336 0.94 3 18 2.1 2e+02 3.7 2.3 2 23 349 370 349 370 0.91 4 18 0.022 2.1 9.8 0.2 3 23 379 400 378 400 0.94 5 18 0.044 4.2 8.9 0.3 6 23 411 428 407 428 0.95 6 18 0.0011 0.11 13.9 6.6 1 23 434 457 434 457 0.97 7 18 0.0047 0.45 12.0 3.7 1 23 463 485 463 485 0.99 8 18 0.026 2.5 9.6 1.0 1 21 494 514 494 515 0.94 9 18 0.00034 0.033 15.6 0.5 1 23 536 560 536 560 0.91 10 18 0.0081 0.77 11.2 4.5 1 23 565 587 565 587 0.98 11 18 0.0037 0.35 12.3 0.2 1 23 603 628 603 628 0.97 12 18 0.27 26 6.4 5.6 1 23 638 661 638 661 0.96 13 18 0.0012 0.12 13.8 0.1 2 23 667 689 666 689 0.93 14 18 0.0002 0.019 16.3 1.5 2 23 693 715 692 715 0.96 15 18 0.0007 0.068 14.6 1.4 1 23 721 744 721 744 0.95 16 18 0.0016 0.15 13.4 1.8 1 23 749 772 749 772 0.98 17 18 0.00054 0.052 14.9 1.6 1 23 778 800 778 800 0.98 18 18 0.0034 0.33 12.4 0.1 1 23 806 834 806 834 0.89
Sequence Information
- Coding Sequence
- ATGGGAAAGAACTGTTTAAATTGTGGCCAAAGTCAAAGCTCCGTGGAATATATAGAGGTTTTCGATGAATTGGGTAAAGAACTGGAATTGGATAAAATCTTGGAGAAGCATTTGGGGCTTTTAATTAAATCAGAAGAATTTAATACTACCGGCAGGATACCAGCTGTTTGCAAAGACTGTATGAATAGTCTTATTGAGTTGATTGACATTGAAGAGCGACAAATCGAAATTGAACAAAATCACAAAAGAAAAGATTCTGGAAGCAAGAATCATGGAACGACTAATGTGTTCGTTCACTCAGAGGCTGTTCTATCGTCTGAATATATATCTGATCAGGCTTCCAACTCCATGAAAAATGAATTATGCAATGTTGAAAATGCATTTGTGGACTATGAACAACCTCATGAATCGCTATCCGTACAATTATCAGAATCTTTGCAAAATGACGTATCTGATGACGATCAAATAAGCATAACTGAAAATGAAGAAGTTGCTGAAGTTGAAATACTCCAATATGAAATTCTAAGCGAAGAAGAAATTACAGAAGACGGATGCTACAGCGAAGAACATTTATCTGAAGAAATTGATATAACTACAGATGCAGAACAAATCGAGTATGTGGAAGAAACTGAAAGTTCtgaattttatttgcataataAGAAAGAATTGGAATTTTCCGATAGTGTTGATATAGATTTAGAGACATATTTGGATGGAGCGATCAATAGCAAATTAGAGGATTTAGATTTTCAATGGCAAAAAGAGTGTTGTTTTTGTTCTCTACGGTTTGAATCGTTCCAAGATGTATTGAAACATATTCAACTGCAACACAGTATTGAACCATGTTTTTCGGCAAAAGACAGAGAggcaatatttttgaatacaaaatatttgtcaagatatattatttttagtcATTGTGATTTGCAAAGCTTACAGATATACAGTACATGTCCGGATTGTAAAGTGAATTTCTCAAATTTTCTACATTTCAATAAGCACTCTTGCTGTCGTACTTTGAAACGTAGAGCCGGTGTTACTAATTATTGTTCAAATTGTAAAGAAGAATTTTCTTCATATAAGAGGCTTACATTTCATTTACAATTTCACTTAAAAAAGTGTAGACCAAGGGCTTGTCTAATTTGTAAGACTCAATTTAGCGACCTAAATGAGTTATTTGAACACGTGCAATATAGTCATGAATCGGGTGATATATTGGCTTGCATTAGTTGTGATCGAGTATTTAAAACCAAATCGATATATGAGGAACATATAAAAAGACACaaagttaattttaaatatgaatgcaATTATTGTACGAAAAAGTATCACCACAAAAGTCTTCTGGATAAGCACATGGAATCATTTCATAATGATATCACTGAATACGAATGCGATTTATGTAGCAAAACTTTTCAAAGTGATACCACCTGGCACAAACATTTGAGGAAACATGTACCTGAAGCAGATGTACAAGCCTATTGCTGCAGTGGATGTGGTTTGATTGCGAGGGACAATCACGAATTGAcaGAGCACATCCATAGAGCTGATGCTAACTCAAATTGTGCTCAAGCCACTGTAGAAGAGGACATTCTGAATGTGGCTTACATTTGTGAATTTTGTTCAATGGAATTTAAAAGGACCGACGATTTAAAAAGGCATCGTGCCACTGGCGTACATGCGGATGGTTTGTATCATTGTGTTTTGTGCCAAAAGCAATTCAATGAACTAAAGACGTTGCGTAATCACACTAAAACACATGGTACCTATGTAGCATGGCTATCTAGTTTTCCGTTAATTCGATTATATATGTGTGATATTGAGGATTGTGAGAAAGCCTATGCCCAATGGGTTGCTTTGTATTACCATAAGCGGCGCTTTCATAAACCAAAAAACCCATCAGAAGCGAAACACAAATGTCAATTCTGTCACATGGAGTGTCCAACGAAAATGTCACTCTCTGTCCATATAGCAAGAAGACACAACAGCAAGAATGTTACATGCCCAACATGTGGATCTTCATACAAAGATGAGAAATCATTGCAAGAACACATTGATTATATGCATGTACCGCAGCAATGCAACTATTGTCATAAAGTTATATCCAATAGGCGTAATTTGGTGACACATGAACGTGTTGTACATCGTAATGAGCAGCGCTATTTTTGTCCTCAATGTGATAAGGGATTCTATCACAAAAATGAAATGGAAGTACATGAGAAGAATGTTCACACAAATGTTGTGTACAAGTGTACTGAATGTTCATTTAGCACCAACTATGAGAAGTCACTTACTATACATATGGACACGAAGCACAAGCAAAAATTTCAGTACCAATGTCCAATTTGCTCAAAGCAATTTGGGCGTAAACATGTGCTGGATTTGCATGTAAAACGTCATGAAGCGCACAAGCaGTACGTTTGTTCCGATCGTATTGTAAATGGTTGTGATGCGGCgttcatttcaaattatttactcAATGCGCATATTAAACAGAAACATGCAACGTTGCCATCAACAAAGCCATCTAAATATGCGAAGAGTGTAGAAGCAACAAGTAACGAGCCATCAATGATTGTTATGGAATTGCTGGAATCTAATTGTGCTGACGATCCATCTTCTGTAGTGATTGACGGCGTTGATATGGTATTAGAAGATGTCATTGAAGatgaaaattgtattgaattgtaG
- Protein Sequence
- MGKNCLNCGQSQSSVEYIEVFDELGKELELDKILEKHLGLLIKSEEFNTTGRIPAVCKDCMNSLIELIDIEERQIEIEQNHKRKDSGSKNHGTTNVFVHSEAVLSSEYISDQASNSMKNELCNVENAFVDYEQPHESLSVQLSESLQNDVSDDDQISITENEEVAEVEILQYEILSEEEITEDGCYSEEHLSEEIDITTDAEQIEYVEETESSEFYLHNKKELEFSDSVDIDLETYLDGAINSKLEDLDFQWQKECCFCSLRFESFQDVLKHIQLQHSIEPCFSAKDREAIFLNTKYLSRYIIFSHCDLQSLQIYSTCPDCKVNFSNFLHFNKHSCCRTLKRRAGVTNYCSNCKEEFSSYKRLTFHLQFHLKKCRPRACLICKTQFSDLNELFEHVQYSHESGDILACISCDRVFKTKSIYEEHIKRHKVNFKYECNYCTKKYHHKSLLDKHMESFHNDITEYECDLCSKTFQSDTTWHKHLRKHVPEADVQAYCCSGCGLIARDNHELTEHIHRADANSNCAQATVEEDILNVAYICEFCSMEFKRTDDLKRHRATGVHADGLYHCVLCQKQFNELKTLRNHTKTHGTYVAWLSSFPLIRLYMCDIEDCEKAYAQWVALYYHKRRFHKPKNPSEAKHKCQFCHMECPTKMSLSVHIARRHNSKNVTCPTCGSSYKDEKSLQEHIDYMHVPQQCNYCHKVISNRRNLVTHERVVHRNEQRYFCPQCDKGFYHKNEMEVHEKNVHTNVVYKCTECSFSTNYEKSLTIHMDTKHKQKFQYQCPICSKQFGRKHVLDLHVKRHEAHKQYVCSDRIVNGCDAAFISNYLLNAHIKQKHATLPSTKPSKYAKSVEATSNEPSMIVMELLESNCADDPSSVVIDGVDMVLEDVIEDENCIEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -