Mdol014425.1
Basic Information
- Insect
- Megamerina dolium
- Gene Symbol
- -
- Assembly
- GCA_963854835.1
- Location
- OY978527.1:19358975-19360583[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.29 28 6.3 4.6 2 21 159 178 158 179 0.92 2 12 0.0052 0.5 11.8 0.3 2 23 193 215 192 215 0.92 3 12 0.00024 0.023 16.0 0.7 3 23 220 240 218 240 0.97 4 12 3.2e-06 0.0003 21.9 1.5 1 23 246 271 246 271 0.98 5 12 0.00065 0.063 14.7 1.7 1 23 277 299 277 299 0.98 6 12 0.00011 0.011 17.0 0.9 1 23 315 338 315 338 0.95 7 12 0.0006 0.058 14.8 2.7 1 23 341 363 341 363 0.97 8 12 0.00062 0.059 14.7 1.3 1 23 369 394 369 394 0.95 9 12 0.021 2 9.9 2.4 1 23 400 422 400 422 0.98 10 12 0.0014 0.13 13.7 0.4 1 20 428 447 428 450 0.91 11 12 0.0002 0.019 16.3 0.3 1 23 456 478 456 478 0.97 12 12 1.1e-05 0.0011 20.2 0.3 1 23 484 506 484 506 0.98
Sequence Information
- Coding Sequence
- ATGATTAAGTTAGTTGATATAACTAAGAGTTCTAAGAGTTTTTATTGTGGAAAAAAGTGCGCTGAAATATTCTTTCAGAATatggataatttttcaattgtatGCTTAGGGTGTGGAATGAAGACGTTTGAATTCAATGATTTTCTATTGCATTTCCATAATATACACCAAGTTCTCAACGATGTCAAGAGCAATGATGAAATATTAACATCTCCACATGTGAAATATTGTTCAGATGTGGAAGATCAGGAATGTTATGATGAAATAATTCCACCTATCATACAAATAAAAGCTGTAGGTAAAGAAGATGATGACGTGTCTCAAAAATCAGAGATGGAAGCAGATAATGCTTGGTCGCCGACAAGCGCTGAATTCTCAGATGATCaatatgatggtgatgatgacatAGGAAAAATCAATAAGAAACAAAAGGCTAAAATTACCGATAAAATGGAGCAAACTGATATTACACTTTGTTGcacatattgtaagaaaatttataaattgcaaaaatgttttgaaCAACATATAGAAAGATGCCAAAGCGGCAATCCTATCGCGAAGCCACGTATTAATAAATGTGCTAGTTGTAAAGAGGAATTTCGTAAAAAATCTGATTTAGATGCACACATATATGAAGAACATGGCGGTTTTGGATGTGATCAATGTGATAGAGTGTACAAAAATCGAGAAGATCTTGAATTGCATCACTTGATTCATTCCGGTGAACGCAATTACAAATGTGATCTAGATGATTGCGGCAAAGCGTTCTTCAATAGAAAATATCTTACCAGACACAAGAGATCGGTACACCGCAAAAGTGAGAATTATCGTTGCAAGATCTGCGGATATAGTACACAAGATAAGGCATCTTTTGTTCAACATAAGTATACTCATCCAGAAGAAAAGGGGCAACGAAAAGAAAGTACGATTAAAAAGGATCACAAGTGTGATAACTGTGAAGAGAAATTTGTTCGAAAATATGATTTAGATGTGCATATAAAAGATGTGCATGGCGGTTTCTGTTGTGACCAATGCGATAGATTATATAAGAATCGGGAGGATCTGCAATTGCATCAGCTTAGTCACTCCGGTAAACGTAGTTATATATGCGACATTGATAATTGCAGAAAAGCGTTCTTCAATCGGAAATATCTCACAAGACATAAGAGATTGGTACACACCGACGAACTTAACTACTGCTGCGAGTTTTGTGGATATCGTACACGAATTAAAGCCGTTCTTATCCGACACAACCGGACCCATACGGGAGAGAAACCATTTGCATGTGAGACGTGCGGCAAATGTTTTGCATCTCGTGCATTGGTTGCAAATCATAGGCCTATACATTCAGAGGAGCGACCGTTCAAGTGTGAAGTGTGCGGTGCAGCATTTGCCCGCTACAAAACACTCGTTCAACACAAGTACATACATTCGGATGTAAAGcaatttgtttgtaaattatGTGGTAAAGCTTTCGCACAGTCCTCCAGCCGGGCTGGACATATGCGACAACATAAAGCCGAGTGGAAAgtttag
- Protein Sequence
- MIKLVDITKSSKSFYCGKKCAEIFFQNMDNFSIVCLGCGMKTFEFNDFLLHFHNIHQVLNDVKSNDEILTSPHVKYCSDVEDQECYDEIIPPIIQIKAVGKEDDDVSQKSEMEADNAWSPTSAEFSDDQYDGDDDIGKINKKQKAKITDKMEQTDITLCCTYCKKIYKLQKCFEQHIERCQSGNPIAKPRINKCASCKEEFRKKSDLDAHIYEEHGGFGCDQCDRVYKNREDLELHHLIHSGERNYKCDLDDCGKAFFNRKYLTRHKRSVHRKSENYRCKICGYSTQDKASFVQHKYTHPEEKGQRKESTIKKDHKCDNCEEKFVRKYDLDVHIKDVHGGFCCDQCDRLYKNREDLQLHQLSHSGKRSYICDIDNCRKAFFNRKYLTRHKRLVHTDELNYCCEFCGYRTRIKAVLIRHNRTHTGEKPFACETCGKCFASRALVANHRPIHSEERPFKCEVCGAAFARYKTLVQHKYIHSDVKQFVCKLCGKAFAQSSSRAGHMRQHKAEWKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -