Mdol001430.1
Basic Information
- Insect
- Megamerina dolium
- Gene Symbol
- -
- Assembly
- GCA_963854835.1
- Location
- OY978525.1:32473102-32475803[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5 4.8e+02 2.4 0.4 2 10 37 45 36 47 0.90 2 14 6 5.8e+02 2.2 0.3 1 23 335 359 335 359 0.89 3 14 0.0079 0.75 11.3 0.7 1 23 364 387 364 387 0.92 4 14 0.00034 0.032 15.6 2.8 1 23 397 419 397 419 0.98 5 14 0.0023 0.22 13.0 2.7 1 23 426 448 426 448 0.97 6 14 6e-07 5.8e-05 24.2 1.8 1 23 454 476 454 476 0.99 7 14 3.1e-05 0.0029 18.8 1.8 1 23 483 505 483 505 0.98 8 14 0.00026 0.025 15.9 0.4 1 23 511 533 511 533 0.96 9 14 2.6e-05 0.0025 19.1 0.5 1 23 539 561 539 561 0.98 10 14 5.1e-06 0.00049 21.3 0.7 1 23 567 590 567 590 0.97 11 14 2.1e-05 0.002 19.4 2.0 1 23 596 619 596 619 0.95 12 14 0.0012 0.12 13.8 3.5 1 23 625 647 625 647 0.98 13 14 0.00044 0.042 15.2 0.3 1 23 653 675 653 675 0.96 14 14 0.00018 0.017 16.4 0.1 1 23 681 705 681 705 0.93
Sequence Information
- Coding Sequence
- ATGTCAAATTTGATAACGACATCTCCAGCGATCATCTCTAATGCGAGAGGAACGATTATTTTGACGAATAGCATCGAGTCACAACAAGATTATATTGTAGGAGTGGTAAAATGTTTCCTTTGTGATCGCACTTTTGTTGAGGGCGAAGAACCATGGCTGATCTTTGAGAAGCGTATACGTGAAGATGGGCAAACTGAATGCTCATTATCTGCTATACTCGCGTCAGCATTAGGACGAGATTTGGAGGAAAATAAAGCACACTCAACTttACTTTGTGATGAATGCAATAGAATTATATTGGATTTTGAAACTTTGGAACAACGCTTCTGTGAAGCTCGTTATCGTATTCTTACCGCATATAATAGTACAGCGAAACGTAATAAGCTTCAAAGAATACCAATCGAAATAAATGGCATACTACAAGATTCAATTTCATCAGAAGATGAGAATGATAATGATGAGCTCGATGATCCAATTATTAAGGAAGAATATGCTGTGATTGAAAATTCCTTACTATCGAACTATGATATTGTGTCTAATGTTGTAAGTGATGCTGATTTAATTGAAGAAATTCAAGACaataacgatgatgataataGTGGTGATGTGAAACATAACCTCGTTGCAACTGAACCATTTACAACAATACATCATTTGAATAAGTATGATGATTTCACAATGATGACTGCTAGCCAAAAAGATACTATAGCCGAATATTCCGTTGAAAATAAAGATAGTGTAATCAACGTTGCTGGTGTTAAAATAGATGGACAAGACATAATAATATATGATGAAGCTTTGGATGACGATTCTGTTCCTATTAGTTACAAAGAACACGACGACGACGAAAGTATGGACAGCCAAACAACACTCGAAAATGTTGGATCGTATACTGCTAGCGATGTTGTCGGTTCAACTGATGGCGATAATACAAATTTGTTGTCTTTGCGTCCTCAACGCGACAATCAACAATCATTCTACGAGAAAAAGGATGGCAATACGTATGTTTGTCTCGTGTGTCCCGTACagcgaaaatttaatttgaaaccaTTTGCCGAGCATATGCGTCGTTCCCACAATGTACGTTTTCATACGTGCGATCTGTGTGACAGCGGATTCGTACGTCGCCAGGAGTTGAACGATCACCTCGATGAAAAGCATAGCTCAAATGGAGATGGTGATGTCGCGTTTATATGTGAAACATGTCAGCGCTCCTTTACGAATTATCGACTATATCGTATACATAAGCGAATGCACTATAGTAGTACAAAGCAACATGAATGCGTGGAATGCCATAAGAAATATGGCTCGAAAAATCTACTTGATGAACACATGAATATGCATACGGGTCAACGTCCGTACAAGTGTAGCAAATGTCCAAAGGATTTCGCCTCAAAGTATACACTGCAAACGCATATGAAAATACACACTGAACGTCAGCGACCCTATCAATGTGATGAGTGCGACAAGTCATTCCTAAATCAGCAGAATCTGACGCAGCACAAAAAGTTGCACGTCGGCATCAAATCCTTCATATGCGATGTGTGCTCTAAGGCGTTCGGGACACAGCACAATCTGGATGTGCATAAAATTGTGCATACAGGCCAACGTCCATTTATTTGTCGAACTTGCGGCAAATCATTTGCTCGTCGTGCCGAAATCAAAGATCACGAGCGCACACATACCGGTGAGCGTCCGTTCAAGTGTGACCTATGCGGTTTAGCTTTTGCACAGCGTTCCAATTTGATGTCGCACAAAAAATCAACTCATCTCAATGAGAAACTGCACAAATGTGATCAATGTGATCGTTCATTCAAGCGGCGTCGCCTGCTGGAGTATCACATCAATGCAGCGCATACGGGTGAACGGCCGCACAAATGTGAAATTTGTGGTGCGACTTTTGTCTATCCGGAACATCATAAGAAACATATGTTAATACATTCTGGCCAAAAACCGTTCGCATGTGAAGTATGTGGCCGGGAGTTTAATAGTCGTGAAAATCGCAATGCACATCGTTTTGTGCATAGCGATAAGAAACCGTACGAATGTTTGGAATGTGGTACGGGCTTTGGCCGTAAGCCATTACTTTTAGCGCATATGAAACGTATGCAGCATATAAACGATACAATTATCGTAAATCAACCACAAATTACTGGTGAGGGTACATTATCACTTTCACGTTATGAGATTAGTTTTGTTGATAGACCAGGCAATGCTAACGGTGAAGAGATTTTTCCAACAACGGAAGATGCATTCGGCGATATAATAGTTAGCGAGGAAAGTATCTTTACACAAATGCAGCAGGAAGACGATGATGCTATTGGCGATAATAAccatggtgatgatgatgacgacgacaatatggatgacgatgatgacaatGCTGTCAATGGACAATTAATTAAAGATCAAATCGGTGATGTCAAGTATTTGCAATTTGAAGAACTCGATAAGGATGGTCATCAAACATTAACATGGGTTGATATTGGCGATAAGGATTAa
- Protein Sequence
- MSNLITTSPAIISNARGTIILTNSIESQQDYIVGVVKCFLCDRTFVEGEEPWLIFEKRIREDGQTECSLSAILASALGRDLEENKAHSTLLCDECNRIILDFETLEQRFCEARYRILTAYNSTAKRNKLQRIPIEINGILQDSISSEDENDNDELDDPIIKEEYAVIENSLLSNYDIVSNVVSDADLIEEIQDNNDDDNSGDVKHNLVATEPFTTIHHLNKYDDFTMMTASQKDTIAEYSVENKDSVINVAGVKIDGQDIIIYDEALDDDSVPISYKEHDDDESMDSQTTLENVGSYTASDVVGSTDGDNTNLLSLRPQRDNQQSFYEKKDGNTYVCLVCPVQRKFNLKPFAEHMRRSHNVRFHTCDLCDSGFVRRQELNDHLDEKHSSNGDGDVAFICETCQRSFTNYRLYRIHKRMHYSSTKQHECVECHKKYGSKNLLDEHMNMHTGQRPYKCSKCPKDFASKYTLQTHMKIHTERQRPYQCDECDKSFLNQQNLTQHKKLHVGIKSFICDVCSKAFGTQHNLDVHKIVHTGQRPFICRTCGKSFARRAEIKDHERTHTGERPFKCDLCGLAFAQRSNLMSHKKSTHLNEKLHKCDQCDRSFKRRRLLEYHINAAHTGERPHKCEICGATFVYPEHHKKHMLIHSGQKPFACEVCGREFNSRENRNAHRFVHSDKKPYECLECGTGFGRKPLLLAHMKRMQHINDTIIVNQPQITGEGTLSLSRYEISFVDRPGNANGEEIFPTTEDAFGDIIVSEESIFTQMQQEDDDAIGDNNHGDDDDDDNMDDDDDNAVNGQLIKDQIGDVKYLQFEELDKDGHQTLTWVDIGDKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -