Mdol008349.1
Basic Information
- Insect
- Megamerina dolium
- Gene Symbol
- zfh1
- Assembly
- GCA_963854835.1
- Location
- OY978526.1:6441154-6445618[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.4e-05 0.0051 18.1 0.7 1 23 194 216 194 216 0.95 2 15 0.0019 0.18 13.2 2.3 3 23 224 244 222 244 0.95 3 15 8.5e-05 0.0081 17.5 0.1 1 23 382 404 382 404 0.98 4 15 0.0014 0.14 13.6 0.6 1 23 410 432 410 432 0.98 5 15 1.2e-05 0.0012 20.1 2.1 1 23 462 484 462 484 0.98 6 15 0.012 1.2 10.7 0.3 1 23 501 523 501 523 0.94 7 15 0.011 1.1 10.8 2.0 1 23 529 552 529 552 0.97 8 15 0.39 37 5.9 0.3 5 19 563 577 560 578 0.91 9 15 0.00051 0.049 15.0 6.8 1 23 587 609 587 609 0.97 10 15 0.069 6.6 8.3 0.3 3 23 616 636 614 636 0.96 11 15 1.3e-05 0.0013 20.0 1.0 1 23 645 667 645 667 0.98 12 15 0.0067 0.65 11.5 0.2 3 23 675 695 673 695 0.97 13 15 8.1e-05 0.0077 17.5 0.5 1 23 701 723 701 724 0.95 14 15 0.055 5.2 8.6 0.2 1 23 734 756 734 756 0.97 15 15 0.075 7.2 8.2 0.0 1 20 1303 1322 1303 1325 0.93
Sequence Information
- Coding Sequence
- ATGGACAGACATTATGGTATTCAGTGGATACAACACGTATCGGGCAGCATGAAGACGGCGGGCCAGCTTGTAATTAGTGCACAACCACCACAGGAGGAGGAAATCATGGCCAGTAGTGGTGGCAATGATGAATATATGGTAGATGAGGATGGCGATATTGTTTCCTCAGAAGCTGACATCGATCAAATAGCAGCGGAGAATCTCATATTCATGGCCCAGGATGGTCAGGTAGTCACAGATATAATTGCCACCGGTACAGATGAAAATGGTGCAGTGGTAGTTTCTGCAAGTGATGGCACGCAAATCGACTGCGAGGCTGTCATGCAGCAAGCAGCGGCCGCAATGTCGGCACATATCACTGATAGGGAGCACAGCGAGAGCACATATAATGAAGAATATTCGGAAACCACTCCACAAATGGTAACCGAAGAAATTATTACAGACGATTGGGTGCAGCATCAAGGGGAAGAAAGAGTTGAAATACCTGCCGAACAAATTATTGGATCAAACTCCCAAAGTCTACTGGATATGGAAGTTCCTTTACCAACAGTTCAAGATGAATATACAGCACTGCGACCATATCCATGTGATTTTTGCAATAGGCGCTTCCGAAAGAAGGCAAGTCTCATGAATCATATGGTAGCACACCAAAATGATCGACCTCATTTGTGTAAATTATGCGGATCACGCTTTTTTCGGCGTTCAGATTTGATAAACCACTTGAAAGCTCATGCAGAGGCGCCTGATCCAGAACTGGATTCTGATTTCATTCATTTTGTGTCGAATGAATCACAACAGCATCAGCATGGACACATTAATGATCACTTTTACGATCAGGACTGGAGCTTACAAGAAGATACCATTAATAGAGCAAATATAAAAGCAAACGGTAACAGTTCTTCGACATCATCTACAGCAACAACGACCACGTCGACGGCTACCACGAAACAACGTGGCCGCGTTAGTCGCCTCAAACCCAAAGAAGAAAATTACACTATAAACGAATCGTTGAACGAACAGAGGGCAAATGTTAACTATGTTGAATGTCAGGAATTGCAGGCTTCAACAGCTACAGTCAAACTTTCGCATGATCAATCGCCTGCTCGTCATGATCACTATCCAATCATAGACGATAGTAAACCGTTTGTATGCCAAGAGTGCGGCTTGGCGTTTGCTCGTGAGAAAGCCCTGAATTCGCATGTCAAGAATCACCGCATGGAATCGCCATTTGAGTGCAATCAATGCAATGAGATGTTTTGGGACAACAATAGCTTGTTGGAGCATCAGAAGACACACCAGTTTGAAGAGAGCAACTCCGAATATGATCCGGGAGAAGCAGACGATAGTCAGACAGAGTCCGAATCGGATCACCTCTATGGTGAATTTTACTGCAGTGAGTGCGGTATGTCGTTTCATCGGCAAGATCTATTGCGACGACATGCTAAAATTCATATGAGAAACGTGACGACGACCAATGAAGTTGACAACAGCAAGGATCTGCATTGTTGCAACACATGTGGTGAAACATTTGCCGAGGCATTGGACTTGTTGGCTCACGCAGAGATACATGCACGCTACCCGCCATTTAAGTGCGTTTTATGTGGCGAATCATTTTTCGAGGAGCACACAATCAAACGACACTTGCAGAGTACACATGCAAAAGATATGACACCGAATTCTTGCATACTCTGCGGAAAAGAGTGCCGGGACCGCAAGGCACTGATTAAACACGCTTGGGATCACTCACGTGAAAAATGCCATTCGTGTTCGAAGTGCGGTAAAAACTTCCACAATAAGGCACGCCTCAAAAGGCACATGACCTCGCATCGTGACAAGTCCGTTATTTGTGACGTGtgccaagaagaatttcccgaTGGCCGATCGCTATCGAATCATAGACATTCGCATAGTGCTACTTCATCGGGCAAGCTGTTTCCCTGCCATGAGTGTGGCAAAACGTTTGGGTCGCGTAGCTCACAACAGATACATGTACGTATTCATACCGGCGAGCGCCCATATGGTTGCCGATTTTGTTGGAAAGCTTTTGCCGATGGCGGTACCCTGCGCAAGCATGAACGCATTCATACGGGTGAGAAACCCTATGCATGCTCGGTGTGTCCGCGTGCTTTCAACCAGCGTGTGGTATTGCGCGAGCATATACGTTCACATCACTCTGGGCTGGATCCCAAATGGGGGAAATATCACTGTTCTGTTTGCAGCGCCGATCTGTCGTCATCTGGCGACTTGATACAGCATCTCATTCAGCATAGCGACATGAACACTGCAATGCAACGTCAACCAGTGACGGGACCACGCAAGTATAAACGTCGTCGAAAGCTGAAGCCACATGAAATTGCACGAATGCGTATTGCTGGCAAGCAGCCAAATGAAAATGACAGCGATATTGATATCTCGGACTTTGATATGGAGAATGTCGATGATTTGCTGGGCATCACGGaatcaaacacaacaacaacaacaacaacctcaaCAAAAACCACCAAAAGTACAACAAATGCCAAACGTAATCGATCAAAGGCTACGGCCGTCGATCAGCCAGACCTGCAGagtggcaataataataataataataataacaatagtaaaaatactaaaaataataatagtagcaaTGGGATATTGGGTAAGATACCGAATGGAAACGTAATCATGAATGAGTCCGATATGGAGCCAATGAATGAATCGAAGAAGCGTTACAATTCGACCGGTAGCAATTCGGATAGATTGTGGCAAACGAAGCTTATCAATTCGAGTGCAACAGATGAAAGTTACAAATCGTTATTGACCAATTTGGAAACTACACTACAAAGTATTGATGCATTGGTTGTGGGCGGTGATCGTAGCGACGATGAGGAAGAAGCATCTACAGCACAACGCACACAGCAAGTGCAAATTGTTAAATCGGACACCGTTAATGTGGGCGCACGAAAGAAGGCCGAACGTAATGCAAAATCGACACGGCCACGAATGATACACACGGAGAGAGGGCGCATCCAAGATAATAAACGTAGCAACTCTAAAATGCACATCACTCGAACTGAGTCTTCCAATTTGGATTTGTTGCAGAAATCCAGAGTGCTCGTGGACGACTATGAAATTATCTCGCCGGATACTCGTCCTCCAAACCAAATAAGTTCTAGTCCATTGCATATTAAGCAGGAACACGAACACCAACAACgtcagcaccagcagcagcaacaacaacaacaacaacagcagcagcaacaagaacaactgTCGGTGTCACAAGTTTGCCAATCGACGCGCAGTGGTGATTTGTACGATGCTCAGCTGTTGTTAGAGGCAGCGACATTACGAAAAGAAGTCTTCGAAAAGTATAATCCCAGCATCGTGAATGACTTGGAAGAGATACTACGTTCACCGcttaaatcggataaaaatgaACGTCGTCGCTTCACAAGTGAATGCTCGACACAGTTCCTAGCAGAAGATCAGCATTTGATTAAAATCGAACCTACCTCACCCGATTTGCGAGAAATTGTCACTAGTGGCGCAGATGAAGTGCGCAGCATGACCAATAATAGCAACATTGAGGCGCGATCGAAACGTTCCACTCGAGCACGTCTAACTACGGCCAATCGTAAATATTTGGAATTTGAGACCGAAATCACTGTACCAACATCGAAGAGTGGTACAATAAATAGCTCACCCAGAGCGACGAATCACGTCAAAAGTAAGACTGCGAAAAGAGCCAAAAGGgaagcaccaccaccaccaacaacaccaacaccaacaccatcatCGACTTCATCGAAAACTCCAACCTATCTGAACTATTCGACAGACTCGATGAATACATCAACTTCACTCAGTTCGACAGGCGCTTCGCCACAAGTGACACCACCTGAACGTAAACAGAGATATTTCGAGTGTGAAATGTGTTCAGCCGTATTTCCAGATCGGCCATCGCTGCTCGATCATGTTCCCATACACATTTAG
- Protein Sequence
- MDRHYGIQWIQHVSGSMKTAGQLVISAQPPQEEEIMASSGGNDEYMVDEDGDIVSSEADIDQIAAENLIFMAQDGQVVTDIIATGTDENGAVVVSASDGTQIDCEAVMQQAAAAMSAHITDREHSESTYNEEYSETTPQMVTEEIITDDWVQHQGEERVEIPAEQIIGSNSQSLLDMEVPLPTVQDEYTALRPYPCDFCNRRFRKKASLMNHMVAHQNDRPHLCKLCGSRFFRRSDLINHLKAHAEAPDPELDSDFIHFVSNESQQHQHGHINDHFYDQDWSLQEDTINRANIKANGNSSSTSSTATTTTSTATTKQRGRVSRLKPKEENYTINESLNEQRANVNYVECQELQASTATVKLSHDQSPARHDHYPIIDDSKPFVCQECGLAFAREKALNSHVKNHRMESPFECNQCNEMFWDNNSLLEHQKTHQFEESNSEYDPGEADDSQTESESDHLYGEFYCSECGMSFHRQDLLRRHAKIHMRNVTTTNEVDNSKDLHCCNTCGETFAEALDLLAHAEIHARYPPFKCVLCGESFFEEHTIKRHLQSTHAKDMTPNSCILCGKECRDRKALIKHAWDHSREKCHSCSKCGKNFHNKARLKRHMTSHRDKSVICDVCQEEFPDGRSLSNHRHSHSATSSGKLFPCHECGKTFGSRSSQQIHVRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSGLDPKWGKYHCSVCSADLSSSGDLIQHLIQHSDMNTAMQRQPVTGPRKYKRRRKLKPHEIARMRIAGKQPNENDSDIDISDFDMENVDDLLGITESNTTTTTTTSTKTTKSTTNAKRNRSKATAVDQPDLQSGNNNNNNNNNSKNTKNNNSSNGILGKIPNGNVIMNESDMEPMNESKKRYNSTGSNSDRLWQTKLINSSATDESYKSLLTNLETTLQSIDALVVGGDRSDDEEEASTAQRTQQVQIVKSDTVNVGARKKAERNAKSTRPRMIHTERGRIQDNKRSNSKMHITRTESSNLDLLQKSRVLVDDYEIISPDTRPPNQISSSPLHIKQEHEHQQRQHQQQQQQQQQQQQQQEQLSVSQVCQSTRSGDLYDAQLLLEAATLRKEVFEKYNPSIVNDLEEILRSPLKSDKNERRRFTSECSTQFLAEDQHLIKIEPTSPDLREIVTSGADEVRSMTNNSNIEARSKRSTRARLTTANRKYLEFETEITVPTSKSGTINSSPRATNHVKSKTAKRAKREAPPPPTTPTPTPSSTSSKTPTYLNYSTDSMNTSTSLSSTGASPQVTPPERKQRYFECEMCSAVFPDRPSLLDHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -