Mdol014419.1
Basic Information
- Insect
- Megamerina dolium
- Gene Symbol
- -
- Assembly
- GCA_963854835.1
- Location
- OY978527.1:19303241-19305221[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.26 25 6.5 10.2 2 23 166 188 165 188 0.95 2 15 0.0006 0.057 14.8 0.8 2 23 200 222 199 222 0.96 3 15 0.00015 0.014 16.7 1.1 1 23 225 247 225 247 0.98 4 15 0.00014 0.013 16.8 0.7 1 23 253 278 253 278 0.95 5 15 0.0016 0.16 13.4 2.2 1 23 284 306 284 306 0.97 6 15 2.9 2.7e+02 3.2 1.7 2 20 318 336 317 340 0.80 7 15 2.9e-05 0.0028 18.9 1.4 1 23 343 365 343 365 0.97 8 15 0.00059 0.057 14.8 1.4 1 23 371 396 371 396 0.95 9 15 0.0012 0.12 13.8 3.0 1 23 402 424 402 424 0.98 10 15 0.00024 0.023 16.1 0.3 1 23 436 459 436 459 0.93 11 15 8.1e-06 0.00078 20.7 0.9 1 23 462 484 462 484 0.98 12 15 0.00076 0.073 14.5 1.3 1 23 490 515 490 515 0.95 13 15 5.2e-05 0.005 18.1 2.9 1 23 521 543 521 543 0.98 14 15 2.9e-05 0.0028 18.9 0.8 1 23 549 571 549 571 0.97 15 15 2.2e-07 2.1e-05 25.6 0.2 1 23 577 599 577 599 0.98
Sequence Information
- Coding Sequence
- atgtttaaattcgGCGATACATCAAAATCGTTTAATAATTCTCAATGTGGGAGAAAATGTGCTGAAGTGTTTTATCAGAATTTGGATAATTTCTCAATAGTGTGTGTGACATGTGAAATGAAAACATTTGATTTCAATGACTTTCTATTGCATTTCAATAATGTACATCATATATCCACTGACGCCAGTATAAAAAGCGACGATAATATACCATCAGATTCGAAGGAAAGTTGTGGGattaaaaatgaacgaaaagttgcagatgcagaagaggaagaaaatGATAACTTTgattatgatgaaaaatttgCACCAATTATACAAATGGCAGGTTCAGATAAATTTGAATTCATATCGGAAAAGTCATCACCTGTCCGGCGCGCGGAAGCAGATGATGCTTGGTCTCCTACAAGTTCTGAAGATTCTGATGAAGATTTCAGGCCAGGCAAGACCATGAAGCTTACTGAAAAAAAGGAGCAAACCGAAACCACACTTTCTTGTACACATTGCAATAAGAAttacaaattgcaaaaatgcCTCGAACATCATATAGAAAAATGTCATAGTGGCAAACCCAGTACTACGCCACGTATTAATAAGTGCAACAATTGTGAAGAACAATTTCGTAAAAAGAGTGACTTggatgtgcatatatataaggTGCACGGTGGTTTTCGATGTGACCAATGCGACAGACTGTACAAAAACCGAGAGGATCTACAATTGCATCAGCTCAATCATACCGGTGAACGTAATTACATATGTGATCTGGGAAATTGTGGAAAGGCGTTCTTTAATCGAAAATATCTTTCAAGACATAAACGTTTGGTACACGCGAAAGAGAAGAGTTTTTGTTGCGATACGTGTGGGTATAGTACACGTATAAAAGCGTCTCTTGAACGACATAAACAAATCCATACAGCAGAAAAGGAGAGCAATACACAGGTACAGAAATGCACTATATGTGATTTAGAATTTGTAGGAAAATGTGAAATAGATGCACATAATTGCGAAGTGCATGGTTTCTTTCGCTGTGACCAATGCgataaagtatataaaaaacgAGAAGATCTTCAATTGCATTATTTAAATCATTCCGGTGAACGCAGTTACATTTGCGATTTTGACAATTGCGAAAAATCGTTCTTCAATCGGAAATACCTTGCAAGACACAAAAGATTGGTACAtaacaaaggaaaaaaatattgttgcgAGACTTGTGGTTATACGACAGAAAGTAAATTATCACTGGATCGACATCAGCGCAGTCATAATGGAGAAAACACCGGTACAAATGCACATAATTACAAATGTACTAACTGTGAAAGAGAATTTGTTAATAAGCGCGACTTGGATGTGCATATTTACGAAGCGCATGGCGGTTTTCGTTGTGATCAATGCGATAGAGTGTATAAGAATCGAGAGGACCTTCAATTACATCAGCTCAATCATTCCGGTGAGCGCAATTATATTTGCGACATCGATAATTGTAGAAAAGCGTTCTTCAATCGGAAATATCTTACCAGACATAAGAGATTAGTGCACACCAATGAGCTTAATTATTGTTGCGAGTATTGTGGATATCGGACTCGAGTTAAAGCCGATCTGATACGACATAAGCGTACACATACAGGTGAAAAACCCTATGCATGCGAAACATGTGGCAAATGTTTTGCAACCCGTTCCTTGGTGGCGAATCATAGAGCTTCACATTCGCAAGAACGACCGTTCAAGTGTGAACTATGTGGGAAAGCTTTTGCACAGTCGTCCAGTCTGGCTGGACATATGCGTCAGCATAAAGCTCAGTGGAATGTTTAA
- Protein Sequence
- MFKFGDTSKSFNNSQCGRKCAEVFYQNLDNFSIVCVTCEMKTFDFNDFLLHFNNVHHISTDASIKSDDNIPSDSKESCGIKNERKVADAEEEENDNFDYDEKFAPIIQMAGSDKFEFISEKSSPVRRAEADDAWSPTSSEDSDEDFRPGKTMKLTEKKEQTETTLSCTHCNKNYKLQKCLEHHIEKCHSGKPSTTPRINKCNNCEEQFRKKSDLDVHIYKVHGGFRCDQCDRLYKNREDLQLHQLNHTGERNYICDLGNCGKAFFNRKYLSRHKRLVHAKEKSFCCDTCGYSTRIKASLERHKQIHTAEKESNTQVQKCTICDLEFVGKCEIDAHNCEVHGFFRCDQCDKVYKKREDLQLHYLNHSGERSYICDFDNCEKSFFNRKYLARHKRLVHNKGKKYCCETCGYTTESKLSLDRHQRSHNGENTGTNAHNYKCTNCEREFVNKRDLDVHIYEAHGGFRCDQCDRVYKNREDLQLHQLNHSGERNYICDIDNCRKAFFNRKYLTRHKRLVHTNELNYCCEYCGYRTRVKADLIRHKRTHTGEKPYACETCGKCFATRSLVANHRASHSQERPFKCELCGKAFAQSSSLAGHMRQHKAQWNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -