Mdol021028.1
Basic Information
- Insect
- Megamerina dolium
- Gene Symbol
- -
- Assembly
- GCA_963854835.1
- Location
- OY978528.1:67074604-67076193[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.6e-17 9.2e-14 51.8 0.0 2 44 334 376 333 377 0.95 2 3 0.018 29 5.4 0.0 27 37 406 416 386 422 0.90 3 3 1.4e-14 2.3e-11 44.1 0.0 4 41 445 482 445 484 0.92
Sequence Information
- Coding Sequence
- ATGAATCATTTAAAATGGATGGGACACGCCACAACCATATTGGATATTCAGAAGAATCTTCGTAATGAACCACACAGTTGTGAGGTGACGCTGGTTGCAAAAGATCATTCAGTGCGTGCTCATCGTTTTGTTCTGTCATCATGTAGCGATTTGTTGCGTAGTCTGCTCGCAGAAATACCATTAGGCCAAGAAGCCACAATTATAGTTCCCGACATAAAAAATGGCCTTCTCTTGGATAGTGTACTTGCCTTCATTTATATGGGTGAGACGTGTTTAACCTCAACAAATTTGTCGGAATTTTTGGAAGCTATCAATATATTGGGCATAAAGTCTGCCATAAGCTTCGAATGCAACACATCCACGCTAACGAATAGTACGACAACAAATACTGCCATGCCGGTGAAAACAATTAGTGAGATTCAAATTGGTCAGGAGGAACTGATTGAACAAGATAATCTTGCTACGCATAAGATTGAAACTCAAAGTGTTATATCGGAACAGCATACAAGTACACGTGAACTAGAATTCTTAGATGTATACAATGAGCCGCAACACAAGATAACCTATTCCATCGAACATATGCCAGGTGCTCCAAATGGAAACGAATTTATATTAACCGAAAATTCGGGCACATTTACTCTAACccaaaacacaaaaattgaaaacGCTTCCGGCTCTGAATCTGAGAAAATTGGTGAAATTGAGGAGGATCCTGACGATACTCACATTATCGAAGAGTACAGTAGTGGGGCTGATGCAATAATCGAAATCGCCGAAAATACGGAAACCGCAGTGGTAGCGGCGACTACATCAACTGGTGGACCTGTCATTCAAATTAAACCAAAGACGAAGAATATAAAACTGAAGACATCTCAAACGAATGCAGCATCCCAAGTATTGCAACAGGCTATCGATAATACAATTGAAGCGTCTGCAGATCCTATTTCTGTTCTCAAAACGGAAAGTTTTACAAGTTTTAGTGAGGGAGGCAACACCATTGAAGGCTCATTGGACTTAGCGGTGCAAGCAGTAATAAATGAAGGTATGAGCTTACAAAAGGCAGCTCAAaagtatgatttatcaaaaacaGTGCTTTGGCGACGTGTTCGCAAACATccgaattatatgaaaaatgccaGAGAAAACCCAGTATTGGTGGCAGCATATGAGCGTATTAAATCTGGCGAATCATTAAAGACTATTAGTCAAGATTTGGATATTCCAATGTCTACACTGCATCGTCATAAGGTACGGTTGGCGCAGCAGGGACGATTACCAGATTATGTAACATTTAAGAAGCGTGATGCCAATTCCAAAAATGCACTTAAATTGAAACTGTCTAAGGCAGTACATGCTTGTGTACACGATGGTATGTCACAAAATCATGCAGCTAATTTATTTGCCATACCGAAGAGTACATTATGGCGCCATTTACAGAAACGTGTTGCTGAAGCTGAATTATCACAGCGCATGGATTCGGAAAATATTAaggaagaaattattttatccTAG
- Protein Sequence
- MNHLKWMGHATTILDIQKNLRNEPHSCEVTLVAKDHSVRAHRFVLSSCSDLLRSLLAEIPLGQEATIIVPDIKNGLLLDSVLAFIYMGETCLTSTNLSEFLEAINILGIKSAISFECNTSTLTNSTTTNTAMPVKTISEIQIGQEELIEQDNLATHKIETQSVISEQHTSTRELEFLDVYNEPQHKITYSIEHMPGAPNGNEFILTENSGTFTLTQNTKIENASGSESEKIGEIEEDPDDTHIIEEYSSGADAIIEIAENTETAVVAATTSTGGPVIQIKPKTKNIKLKTSQTNAASQVLQQAIDNTIEASADPISVLKTESFTSFSEGGNTIEGSLDLAVQAVINEGMSLQKAAQKYDLSKTVLWRRVRKHPNYMKNARENPVLVAAYERIKSGESLKTISQDLDIPMSTLHRHKVRLAQQGRLPDYVTFKKRDANSKNALKLKLSKAVHACVHDGMSQNHAANLFAIPKSTLWRHLQKRVAEAELSQRMDSENIKEEIILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00967332;
- 90% Identity
- iTF_00967332;
- 80% Identity
- iTF_00967332;