Basic Information

Gene Symbol
ct
Assembly
GCA_963854835.1
Location
OY978527.1:3640193-3686006[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1.4e-26 2.3e-22 79.7 0.0 3 71 759 828 757 834 0.94
2 3 5.7e-32 9.8e-28 96.9 0.0 3 77 1242 1317 1240 1319 0.96
3 3 7.8e-31 1.3e-26 93.3 0.0 3 76 1487 1561 1485 1564 0.96

Sequence Information

Coding Sequence
ATGGCTGATATTGCTAGCATTTTGCGTGATAAAGTGATTAAAGCACTTATCGAGGAGGTACAACGCTTACGAGCCCTCGAACAAACACACGTTGTACAAATACATCGGCTGGAGGAGCATTTAGAGGCGAAACGCCAACATATTATACGTTTAGAGGGACGTTTGAACAAACATGAAATCAATGTGACGCTTGCTGAGAcgactaataataataataataataataataataatagtaacaacaataacaataacaacaacagtcatAATAACAATACAGCATCATCGGCAACAGTGGCAGCAATCAGTATAGCCAATAAGGCATTATTTAAAGAATCAATTGTAACCGAAagcaatgataataatgatactGCGAATATTACACCACTTGCTATTgacgacgataatgatgatgatgatgatgatcgtgatcatcataatcatgatgatgCACATAATGATCAACACGATCATGACCATGATAATTCAGAACAGATTAGAGTCAATACAGGAATCGATTATGAAAAACATATTACCCATAGTCATCAAATGGATATGGAAGATCGCGAAGACATTGATGGTGATAATAATACAGATGCAGATCATGGTGAACAACATCAAAATGAACAACAAAGTATTGCCAGCAAAGATTTTCATCAGGAAAATTTAATATCAGCAACATCGgcggcagcagcaacagcaggaaCATCAAGTCAACAACTACAAGTCAAAAAGGAAACACAATGTCCACTCGATCTGGATGCAATTAGTCAACATTCAGCaattgctgccgctgctgcgGCTGCAGCTGCCTGTGCTAATGATCCGAATAAATTCCAGGAACTCCTTTTAGAACGCACGAAAGCTTTAGCGGCAGCAGAGGCCTTTAAGAGTTCGGAAGGAACAACAGctcatgatgataatgatgatgatgatgatgatgatgatgatcacaaTAACCacatttatgatgatgatgatgacatagATCAAATCAATGTCAAAAGCTCTATGCTAGAGCATAATAAAGTAAACAACGATGGCGATGACGAAAATGgcgaagaacaacaacaagtcAAAAAAGCAACcgataaagaagaagaagaagaagaagaagaagaagtgagagacgataataatgatgatgacgatgaaatAGCAAGtgtaaaaataccaaaaattgaaattggtgatgacgatgatgatgatgcattgCTAATGCCAACCATAGACGTGGATGCGTTAGCGGATGCAAGTGACAAGCTGCCCAACACTGAACCCAACAATGATGTCGATGAATGCTTCGAACATAATGTCGATCATTTTGGCTCGTTGCTAGGTGAAGAACTTGTCAATTCATATTGGCGACATGGTTTTAAATTACCCTCACGACAGTCACCTCAGGCAACGACAACAGCGGTAACCACATCATCTACGCTAACAAAAACGCCTAATATATTTCAGAATGCTAATACACAAATGCTGTTGCCACCaacacagcaacagcaacagcaacagcaacagccaaTGTTAAATAGCTCAACAGCCGCCGTCCATCTtccacaacagcaacagcagcagcagcagcaacagcaaccacagcaccaccaccatcatcagcacctccaacaccagcaccaccaTCTTCCCCCACATCATCACcaacaccaccgccaccaccaaatgcatcagcagcagcatggaCCTTCGTCCACTGCCTTGCTGAGTCAATTAGTTAATTCAACCTTCTCATCTGCTCCTTCTCTACGTACAGATGCATTgatgcagcaacagcaacagcaaccgcagcagcaacatcatcttcagcagcagcagcagcagcagcaccaccacctccaccaccaccaccagcatcaGCATCATTTGAGCGAACGCAGCGAACTTGAGAAGTCGTCTTCAAGTGCAAGCACACCAAATCTCCACGATCAACGTTCGAATGATGAATCACACCTGCTTGGCGGCAGTCATTCATTGAATGGCGCACACAAATCCATCGAAGATAATAGCAATACAAGTTTGTGTGCCACACCCACCTCCGCATTGGCGCCACATCCTCATCTCCCACCCGGTTTCTTACCCGGTTTACCATTCCAATTTCAAGATCGTGGCCATTTCCGTTTTGCCGAAGACATACAATTGCCACCGGGTGCTTCAATGGCTGGCCGCCTGGGCGAATCCCTAATACCGAAAGGTGACCCCATGGAAGCAAAGCTACAAGAGATGCTACGCTACAATATGGACAAGTATGCAAATCAAGCCTTGGACACATTGCACATATCACGTCGTGTACGCGAACTGCTATCCGTACACAACATTGGACAGCGTCTATTTGCCAAATACATACTCGGACTATCGCAAGGTACTGTTTCTGAGTTGCTGTCCAAACCGAAACCGTGGGATAAGCTAACCGAAAAAGGACGTGACAGCTATCGTAAAATGCACGCCTGGGGATGTGACGATAATGCTGTCATGTTGCTGAAATCGCTAATACCCAAGAAAGattcTGGTCTACCACCATATGGCGGACGAAATGAGGATTCCATGTCTGATGATCGTATTGCTCATATACTCAATGAAGCATCGAGTCTGATGAAAAATTCAACACCAAACTCTCTGCAGCAGCAACTAAAAGAGGAGCAACAGCGTCAGCTGCAACATCATCAGGAACAACAACGTCGCTCCGTACATGATGAGTCTCACAGTAACGAGGATTCCAAATCGCCAACACATCAAACATGCACCTCACCCTTCTATAAGGACCAATTAAAATCTCAGCCACATGAAATcgcacagcagcagcaacagcagcagcaacaacagcaacagcaacaccatcGTCTTCGTCAAGAGGAACTGACCCAAGACAAGATGACACGCTTATATCAGGAGATAATGTCTCGTGCGCCACGAGAGACTTCTTTCCCAAGTTTCCTGCTTTCCCCGTTTTTCAGTGCAGCTGGTGGTGGCATGCCACCATCCGCAGGTTTGGGTGGCAATGCATTCCCGGCCGCTGCAGCAATTTCTGCCGATGAGAACATCCGGCTTGCATTCGAACGTGAAATGActaaattgcaacaacaacaacaccaacagtcAGCCATCGCCGGCAACATACCTCATTTCCCAAATTTCTCCAGCCTGATGGCGTTGCAGCAACAGGTATTGAATGGCGCTCAGGATCTGTCTCTCACCAAAGACGGTGCCGGCAAGGATATGAAAGCCAACGGCCAGCGTCCCTCTCTAGATCATTCAATCAACAACAACTCTATGGACTCCCAAACAGCTGGCAGCAGTGTCAGTCAATCGGCTACAAATACCAAAGATCTTAACGATATAGAACGCCACACTGGCTCCGGCAGCGGGGGCAATTTTTCGGCATTACATCAGCGTAAGATTGAAAGTTGTGCAGGTGCAGGTGGAGGTGGCGGTGGGGGTAATATAACTCCGGCCCCACCTTCGTTAAGCAACGCTTCGGCGCAGAACACCAACTCAGCCGCACCTAGTCCACTCAGTAATTCAATTCTTCCACCCGCAATGACACCCAATGAAGATTTTTCGGCTGCCGCCAGTCCACTGCAGCGCATGGCATCAATTACGAATTCGCTAATCACTCAGCCGCCCGTAACACCGCACCACTCACAGCCACAACGTCCCACCAAGGCAGTGCTGCCGCCAATTACCCAGCAGCAATTCGATATGTTCAACAATCTCAACACGGAGGATATTGTGCGACGTGTTAAGGAGGCACTCTCTCAGTATTCCATCTCGCAACGGTTATTCGGGGAATCGGTGCTGGGTCTGTCGCAAGGATCTGTCTCAGATTTGCTAGCCCGACCCAAACCATGGCATATGCTAACTCAGAAGGGACGGGAACCATTTATTCGCATGAAGATGTTTCTCGAGGATGATAATGCCGTGCATAAGTTGGTTGCAAGCCAATACAAGATTGCCCCCGAGAAGCTGATGCGCACCGGCAGCTACAGTGGTAGCCCACAAATACCACAAGGACTGGCGAGCAAGATGCAAGCCAGTTTGCCAATGCAGAAAATGATGAACGATTTGAAGCTACAGGAACCTGGTCAGGCGCAACACATTATGCAACAGATGCAAGCGGCTGCAGCCATGTCTGCCGCaatgcaacagcaacaccaccaacaacaacagaatcatCAACAACAGGCCGCCGCTGCCGTGCAAGCAGCACAAGCAGCCGCAGCTGCAGCGCAGGTTGCACAGCATCATCAGAGCATGTTGTTGACTTCGCCCGGTCTGCCACCTCAACATGCTATCAACTTGCCAGCATCAAATGCGGCGCCGCCCAACAGTTGCGATAAAAAGCCCATGATGATGCCGATACATTCACCCCACCAAGCCAATGCAATGCGTAATATGCACCAGCACATGTCGCCGACCGTCTACGAGATGGCAGCACTGACACAAGATCTCGACACACAGGTGATAACGACAAAAATCAAGGAAGCCCTTCTGGCCAACAATATTGGCCAGAAGATTTTTGGCGAAGCAGTGCTTGGCCTTTCGCAGGGTTCGGTATCGGAGTTGCTGAGCAAACCAAAACCATGGCATATGCTTTCGATCAAAGGTCGTGAACCATTCATACGCATGCAGTTGTGGCTCTCCGACGCCAACAACGTAGAGCGACTGCAGGTGATTAAGAACGAACGACGCGAAGCAAGTAAACGACGTCGCTCAACAGGACCCAATCAACAGGACAACAGTTCAGATACATCAAGCAACGACACCAACGATTTCTATACCAGCAGTCCCGGACCTGGTTCTGTTGGGTCGTCAGTGGGTGCCCCACCCAATAAAAAACAACGTGTCCTCTTCTCCGAAGAGCAGAAGGAAGCTCTTCGGTTGGCATTCGCACTGGATCCATATCCGAATGTAGGTACCATCGAATTTCTAGCCAATGAATTGGGCCTAGCCACACGCACCATCACCAATTGGTTCCACAATCATCGTATGCGTCTTAAGCAACAGGTGCCGCATGGTCAACCAGGCGCGGATAATCCGATCCCATCACGCGAAAATACAAACTCCACACCATTCGATCCTGTGCAGTTTCGCATTCTGCTTCAGCAACGTCTACTGGAGCTGCACAAGGAGCGTATGGGTTTAAGTGGTGCGCCCATACCGTACCCACCGTATTTTGCTGCGGCCGCATTGTTGGGACGCAGTTTGGCCGGCATACCGGGCGCGGCGGCAGCTGCAGCTGCCGTTGGCGGTGAACCCGATCTGCACGCACTCAACCAAGCCTTCAGAGAACAAATGAGAGGTCTGGACCTTACAATGAGCTCATTGAAACGTGAACGTACGGACGATTTCGACGATGATTTGGACGAAGGTCATCTCAGTGATAATGAATCATTGGATGGCGGTGATGGGGGTGGCAGTAGTATAGGTGTTGTTGGCATAGACGACAAATCGGGTGAGTACAAGGAATCACCACGCTCTTCATTAACTCCTGGCATCGGCATCGGTGGAGGCTACTTTGGCATCAATGCAGTACGTAGCTCGAGACGCAAACCAGCAGCACCGCAGTGGGTGAATCCAGCTGGTACAGTGGTGACACCAAACACAGCACTACAACCTGCCGCAACGGCTGCCGACGCTGAACGCATCATCAATGGTGTCTGTGTATTGCAATCACAATCGTCCGATTTCAGTTGTCGTGAGGACAATGATGAAGCAACGCCAACGGCCGCAACGtcaacaacaacgacatcaGCAGCAGTAGCGCCACATCCAGCTGAAGAAAAAAATGCCGATGAACAAATTAGCAATCCGCCTGCTGAGCTCGATCACGAACAGCCGGATGACATCGATCAGCGTTATATGGAGCCCGAAGTGCGAATCAAACAAGAGGAAGAAGACTGTGAGAGTGAAGCTGAGCCAAATGTTGTGCCCGAGACGGCAGCGATGGAAGCGAAAGAGGAAAAAATCAAAGTTGTGGGCGAGGAAAAATTGCGTATGGTACGTGTGAATCGCCTTAGTCATGAGGAGGATGTAGCACCGCCAATATGGCCGAATTATTAG
Protein Sequence
MADIASILRDKVIKALIEEVQRLRALEQTHVVQIHRLEEHLEAKRQHIIRLEGRLNKHEINVTLAETTNNNNNNNNNNSNNNNNNNNSHNNNTASSATVAAISIANKALFKESIVTESNDNNDTANITPLAIDDDNDDDDDDRDHHNHDDAHNDQHDHDHDNSEQIRVNTGIDYEKHITHSHQMDMEDREDIDGDNNTDADHGEQHQNEQQSIASKDFHQENLISATSAAAATAGTSSQQLQVKKETQCPLDLDAISQHSAIAAAAAAAAACANDPNKFQELLLERTKALAAAEAFKSSEGTTAHDDNDDDDDDDDDHNNHIYDDDDDIDQINVKSSMLEHNKVNNDGDDENGEEQQQVKKATDKEEEEEEEEEVRDDNNDDDDEIASVKIPKIEIGDDDDDDALLMPTIDVDALADASDKLPNTEPNNDVDECFEHNVDHFGSLLGEELVNSYWRHGFKLPSRQSPQATTTAVTTSSTLTKTPNIFQNANTQMLLPPTQQQQQQQQQPMLNSSTAAVHLPQQQQQQQQQQQPQHHHHHQHLQHQHHHLPPHHHQHHRHHQMHQQQHGPSSTALLSQLVNSTFSSAPSLRTDALMQQQQQQPQQQHHLQQQQQQQHHHLHHHHQHQHHLSERSELEKSSSSASTPNLHDQRSNDESHLLGGSHSLNGAHKSIEDNSNTSLCATPTSALAPHPHLPPGFLPGLPFQFQDRGHFRFAEDIQLPPGASMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWGCDDNAVMLLKSLIPKKDSGLPPYGGRNEDSMSDDRIAHILNEASSLMKNSTPNSLQQQLKEEQQRQLQHHQEQQRRSVHDESHSNEDSKSPTHQTCTSPFYKDQLKSQPHEIAQQQQQQQQQQQQQHHRLRQEELTQDKMTRLYQEIMSRAPRETSFPSFLLSPFFSAAGGGMPPSAGLGGNAFPAAAAISADENIRLAFEREMTKLQQQQHQQSAIAGNIPHFPNFSSLMALQQQVLNGAQDLSLTKDGAGKDMKANGQRPSLDHSINNNSMDSQTAGSSVSQSATNTKDLNDIERHTGSGSGGNFSALHQRKIESCAGAGGGGGGGNITPAPPSLSNASAQNTNSAAPSPLSNSILPPAMTPNEDFSAAASPLQRMASITNSLITQPPVTPHHSQPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGSYSGSPQIPQGLASKMQASLPMQKMMNDLKLQEPGQAQHIMQQMQAAAAMSAAMQQQHHQQQQNHQQQAAAAVQAAQAAAAAAQVAQHHQSMLLTSPGLPPQHAINLPASNAAPPNSCDKKPMMMPIHSPHQANAMRNMHQHMSPTVYEMAALTQDLDTQVITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQVIKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSVGAPPNKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGLATRTITNWFHNHRMRLKQQVPHGQPGADNPIPSRENTNSTPFDPVQFRILLQQRLLELHKERMGLSGAPIPYPPYFAAAALLGRSLAGIPGAAAAAAAVGGEPDLHALNQAFREQMRGLDLTMSSLKRERTDDFDDDLDEGHLSDNESLDGGDGGGSSIGVVGIDDKSGEYKESPRSSLTPGIGIGGGYFGINAVRSSRRKPAAPQWVNPAGTVVTPNTALQPAATAADAERIINGVCVLQSQSSDFSCREDNDEATPTAATSTTTTSAAVAPHPAEEKNADEQISNPPAELDHEQPDDIDQRYMEPEVRIKQEEEDCESEAEPNVVPETAAMEAKEEKIKVVGEEKLRMVRVNRLSHEEDVAPPIWPNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00967051;
90% Identity
iTF_00967051;
80% Identity
iTF_00967051;