Musi004560.1
Basic Information
- Insect
- Megalurothrips usitatus
- Gene Symbol
- ZFY
- Assembly
- GCA_026979955.1
- Location
- CM049592.1:18327408-18333203[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.22 17 5.5 0.4 3 23 322 344 320 344 0.90 2 14 0.88 67 3.7 2.0 1 21 474 494 474 498 0.90 3 14 0.042 3.2 7.8 0.6 2 22 560 582 559 585 0.85 4 14 1 77 3.5 2.0 1 23 607 630 607 630 0.93 5 14 1.2 93 3.2 0.1 1 20 637 656 637 661 0.87 6 14 0.071 5.4 7.1 0.2 2 23 682 704 682 704 0.90 7 14 0.0071 0.54 10.3 0.9 1 23 709 732 709 732 0.96 8 14 0.01 0.77 9.8 0.4 1 23 801 822 801 822 0.98 9 14 0.0019 0.14 12.1 2.7 1 23 828 851 828 851 0.94 10 14 0.00036 0.027 14.3 4.8 3 23 920 941 918 941 0.92 11 14 0.9 68 3.6 0.0 3 23 948 970 946 970 0.92 12 14 0.02 1.5 8.8 3.7 1 23 980 1002 980 1002 0.98 13 14 0.035 2.7 8.1 4.7 1 23 1008 1032 1008 1032 0.97 14 14 0.044 3.4 7.8 6.6 1 20 1038 1057 1038 1059 0.94
Sequence Information
- Coding Sequence
- ATGGCGCTGTCGCCGCCGCTGCCCGCGGACGATGGCGAGGACGATGACACCCACTTCTGCTTGCGGTGCCGCCGGACCATCCGGGGCCTGGACGCCTACGTCCGCCACCGGAAGGAGGAGTGCCCCGGCACCTCCGGCAGCAAGCCCGCGCTGCCGGTGTGCTCGCCCCCGCCCGacctgcagcagcagcagcagcagcagcagcagcagcagcagctgcggGCGGATGACTTCTTCTCGCAGCTCGAGCTGCAGAGCAGCAGCAAGACTTCGGCCAAGGCCGCGGCGACGCGCGACGCCCCGGCCCCGGCGCCCTCGGCCGTGTCCCCGGGCAAGACCCCCGCCGCCCCCAGCGCACCCCGCCGCATGCTGACGCGCAGCAAGAGCTCGGGGTCGACTCCGGCCGCGACGGAGCCGCCGAGAGCCGCGGCCCGACGAGTCCGGACGGTGACGAAGGGGGGCGACGAGGACGCCGACGAGGCGCGGACGCACCCGCCTCGGACGCACACGGGCGGCAAGTGGAGGCCCCAGCAAGAGGCCGCCGACGTCAAGGAGAGCATCTGGCGTCGCTGGCGCGCCCCGTCACCGGACGCGGCTGCGACGCCGCCGCCAAGCGCAGGCGGGAAGTGGGGGCCTCCGAGGGGGTCGTCACCAGGACCGCCGCAGAGGCCGTCGCTGGGAGCTCCGCCGCCAACGCACACGGGCGGCAAGTGGAAGCCGTGCTGCGCGGCGAACGCCCCCGACGGCGGCGACGACGACGATGAAGCTGACAGTGCTGGCGACGACGGTGACGTGGAGGACCAGCACGACGTGCCGCCGCCCGGCCACACGCGCGGGAAGTGGGCCCCCGGCATGGCCGGCAAGGTCCGCGCCGTGCTGCTGGGCTCGGCAGCGGCAGCGGCGGCGGCGGCCCGGACCTCGCCAGCCAGCGTCCGCAAGTATGGGAGCGAGGTGCAGTACTGGTGCGGGTCGTGCAACCGCAGGCTGGCCAGCAGCAAGATGTACGAGCGCCACCTGCAGTCCGACCTGCACTCCCGGCGCACCCTCCCGGAGCGGCAGCTGGAGGCGGGCCTGGCCGGGGGGAGCGTGGCGGAGCCCGGCCCGCGGCAACGGCGACGGTCCGCAGGGCCACCGCCGAAGGAGCTGGGCGCCGACGGACCACGAGGCCCCGCCGCCGCGGACCCGGTGGACAGCGGCGCGTCATCAGGTCCGGAAGGGCAGCGGCGCGGCCTCCGCCACGGCCTGCAGCGCTGCCCGGTGTGCCGCGCGCGCGTGCTGCGGCACCAGGTCGGCAAGCACCTCGTGTCGCACTTCCACTGGCGCAGCACGCGCGCCGCGTCCTCGGCGCCGCTGGCGGTGGGCTCGGCGGCCGCCGACCTCGTGCTGGACAACATCGAGGCCGTGGTCCGGCAGTCGCCCTTCCAGTGCGGGCTCTGCAAGTTCTACTGCAACACGTCCCAGGCCTTCCGGGACCACTGGGCGTCCACGGGCCACCGGCGCGCCGACCGCGAGTTGGAGGCCGGCGGCGTGGCCGGCCAGTACTGGTGCTCGCCGTGCGAGGTGGGCTGCCCCACCACGGACCTCATGGAGACTCACCTCTGGAGCGAGGCGCACCGCGAGGTGGAGGCCGCCGTCAACCGGAGCGTGGCCATCGTGGTGACGAGGCGGACGGCGCTGCGCTGCCGGGCGCCGGGGTGCTTCGCCAGCTTCCGCTACAACGCGCAGCTCGCCCGGCACGAGCGGCTCTGCGAGCACCGCGGCGCGGCCGGCCGCCCCGACCTGGGCCCCTCGACGGCCAGCGACCGCTACCAGGCGCGCTTCAGGTGCGCTGTCTGCGGGGCGCTCCGCCGGTCCCGGCTGTCCCTCCAGAAGCACAAGCTCCAGTGCCACAGCCAGGCCCCAGGCTGCTATTTCTGCAGCGTTTGCTCGCTCGACTTCCCCACGGCCACCTCGGCGGCGGAGCACCGGCTGGGCCAGGCGCACCGGGATGCGGTCCGGGACCGCAGGGAGGCCAAGGCCGGCGGAGTCCTCCGGCCGCTGAGGCGGTGCCCGCACTGTCGCTGGCGGGCGCGGGGGCTCGCCGAGCTGCGGCGCCACGTGGAGGACGCGCACCCCGACCGCAAGCACCGGTGCGCGCTGTGCGGCCTGGCCTTCACGCTGCCCCAGGAGGTGTCCCGGCACCACCGCCTCGTCCACGCCGTGGCCGCTGCCACGGACAACGCGGCGCCCCCCACCCCCGTGGTCCTCGGGGTCGACGAGGAGCCCCCCTTCGGCTGCCGCCTCTGCGGGTTCTCCACCGACTCCAGGGCGGAGTTCATCTTCCACCAGGTGCTGCACGGGCCGGCCTCCGCCGAGGAGGGTGCGGGCGACGCCCCCGACAGGTCGGCGTCCCGCGGCCGCTACCGCTGCCCCGTCTGCGCCAAGCTGTACCGCAAGGTGGCCCTGCGCGCGCACCTGCACGTCCACACCGGCGAGCGCCCCTTCCGGTGCGGGCGCTGCGACAAGTCCTTCAGCCGCAAGGACTCCTGCGTGACACACGAGCTCACGGCCCACCCGAGCCGCCCCCCGGAGGTCGAGGACGGCGACGACGCCCTCGAGCAGGAGCGTCAGCTGCAGCACGCGGTGCTGTCCATCGCTCCGTCCGCGGCGTCGGCGGCGACCGTACGCCGGGTCGTGCCCGTCGTGGCCCCGCACCCCCAGCGCCCCCAGGCCCAGGACCTCAGTGGCCAGGGCCAGGACCGGGAGAGGAAGCACCTCTGTGACGTGTGCGGCAAGTGCTTCTTCAACAAGAGGACGCTCCGCCAGCACCAGGTGTCGCTGCACGGCGTCAAGCCCCAGCCGTGCCCGAGGCCCGGGTGCGCCCACCGCGCCCGCTCCGCTGCCGAGCTCCGCGCCCACGAGGCCACCCATGGCAGCGGCCCCGAGCGGCGCGGCGGCTTCGAGTGCGGAACCTGCCACTTCCACGCGCGCACCAAGGCACTGCTGAGGAGGCACGAGAAGATCCACAGCGGCGAGAAGGCGTACCGCTGCGAGTTCGAGCGCTGCCACTTCGCCACGCGCGTCAGCTCGCACCTCGTGCGGCACCGGCGCCTGCACACCGGGGCCAAGCCCTTCTGCTGCCCGCACTGCAGCCACCGCTGCAACAACCTGGAGAACCTGCGCAAACACGTCCTGAACACCAACAAGCACCCTGGCAAGTTCATGTACGAGTGCCGGTTCTGTGCCGGGGCTGCCGGGGACGCGGCCGCTGAGGCGGGGGACGGCGCGGAGCAGTTCAAGACCAACCTGGCCGCCGAGTTCAAGACCCACCTGGCGCTCGCGCACCCTGAGAGGTTCCGCAGCCAGGCCGCGGCGGCCACGTTCGTGGCGGGCATCTACGACAAGGCAGCCGACCAGGAGCCCGGCGACCAGGCCCTCGTCCTGGTCAAACCACGGTGCGTGCCAGGCGCCGGCCCCGCCCTGCGGCGCCGTGCCGCGCCCGCGCAGCGCGTGGCCCTCACTACCGCACCCTTCCGCATTTCCAGGAAGGTTCGCGGCGAGAGGAAGTCGCAGCAGGCGCAGGCAGCCGCCGCCATCCTGGCCATGTCGTACCCCGGCGTCCCCGACGACGACGCCGCCGCGGAGGAGGACGTCCCCACGTCCCTGCTGCCCAAGCACTCGCTTCTGGACGCGGAGCTGTTCCCGGTGGTGGTGGCCGACCTCGCTGGCCTCGCCGACCTGGACGCGGACTCGCCGCAGCCCCAGGACGTGGTCTACATCCAGCTGGAGGGCGACGAGGGAGACGTTGTTGTTCTGGAGAACTGA
- Protein Sequence
- MALSPPLPADDGEDDDTHFCLRCRRTIRGLDAYVRHRKEECPGTSGSKPALPVCSPPPDLQQQQQQQQQQQQLRADDFFSQLELQSSSKTSAKAAATRDAPAPAPSAVSPGKTPAAPSAPRRMLTRSKSSGSTPAATEPPRAAARRVRTVTKGGDEDADEARTHPPRTHTGGKWRPQQEAADVKESIWRRWRAPSPDAAATPPPSAGGKWGPPRGSSPGPPQRPSLGAPPPTHTGGKWKPCCAANAPDGGDDDDEADSAGDDGDVEDQHDVPPPGHTRGKWAPGMAGKVRAVLLGSAAAAAAAARTSPASVRKYGSEVQYWCGSCNRRLASSKMYERHLQSDLHSRRTLPERQLEAGLAGGSVAEPGPRQRRRSAGPPPKELGADGPRGPAAADPVDSGASSGPEGQRRGLRHGLQRCPVCRARVLRHQVGKHLVSHFHWRSTRAASSAPLAVGSAAADLVLDNIEAVVRQSPFQCGLCKFYCNTSQAFRDHWASTGHRRADRELEAGGVAGQYWCSPCEVGCPTTDLMETHLWSEAHREVEAAVNRSVAIVVTRRTALRCRAPGCFASFRYNAQLARHERLCEHRGAAGRPDLGPSTASDRYQARFRCAVCGALRRSRLSLQKHKLQCHSQAPGCYFCSVCSLDFPTATSAAEHRLGQAHRDAVRDRREAKAGGVLRPLRRCPHCRWRARGLAELRRHVEDAHPDRKHRCALCGLAFTLPQEVSRHHRLVHAVAAATDNAAPPTPVVLGVDEEPPFGCRLCGFSTDSRAEFIFHQVLHGPASAEEGAGDAPDRSASRGRYRCPVCAKLYRKVALRAHLHVHTGERPFRCGRCDKSFSRKDSCVTHELTAHPSRPPEVEDGDDALEQERQLQHAVLSIAPSAASAATVRRVVPVVAPHPQRPQAQDLSGQGQDRERKHLCDVCGKCFFNKRTLRQHQVSLHGVKPQPCPRPGCAHRARSAAELRAHEATHGSGPERRGGFECGTCHFHARTKALLRRHEKIHSGEKAYRCEFERCHFATRVSSHLVRHRRLHTGAKPFCCPHCSHRCNNLENLRKHVLNTNKHPGKFMYECRFCAGAAGDAAAEAGDGAEQFKTNLAAEFKTHLALAHPERFRSQAAAATFVAGIYDKAADQEPGDQALVLVKPRCVPGAGPALRRRAAPAQRVALTTAPFRISRKVRGERKSQQAQAAAAILAMSYPGVPDDDAAAEEDVPTSLLPKHSLLDAELFPVVVADLAGLADLDADSPQPQDVVYIQLEGDEGDVVVLEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -