Basic Information

Insect: Megalurothrips usitatus
Gene Symbol: ush
Assembly: GCA_026979955.1
Location: CM049600.1:5880032-5896311[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0066 0.51 10.3 0.1 1 20 319 338 319 340 0.94

2 8 0.00015 0.012 15.5 2.6 1 23 410 432 410 432 0.99

3 8 0.08 6.1 6.9 3.1 2 20 469 487 469 489 0.93

4 8 0.0065 0.5 10.4 3.2 2 21 894 913 893 914 0.95

5 8 0.00086 0.066 13.1 0.5 1 20 968 987 968 989 0.95

6 8 0.027 2 8.4 0.0 2 23 1056 1077 1055 1077 0.97

7 8 0.00051 0.039 13.8 0.9 1 23 1083 1105 1083 1105 0.99

8 8 0.0034 0.26 11.3 2.3 1 23 1169 1192 1169 1192 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0066	0.51	10.3	0.1	1	20	319	338	319	340	0.94
2	8	0.00015	0.012	15.5	2.6	1	23	410	432	410	432	0.99
3	8	0.08	6.1	6.9	3.1	2	20	469	487	469	489	0.93
4	8	0.0065	0.5	10.4	3.2	2	21	894	913	893	914	0.95
5	8	0.00086	0.066	13.1	0.5	1	20	968	987	968	989	0.95
6	8	0.027	2	8.4	0.0	2	23	1056	1077	1055	1077	0.97
7	8	0.00051	0.039	13.8	0.9	1	23	1083	1105	1083	1105	0.99
8	8	0.0034	0.26	11.3	2.3	1	23	1169	1192	1169	1192	0.96

Sequence Information

Coding Sequence: ATGCCGCCGCCGCTGCTGCCGCCGCTGCTGCCGTCGCCTGCCATGCAGATGCGTGAAGACGAGGGTTGGGGCAGCGATGGCGACCCGGGCGCGGCGTCCGCCGTCGTGGCGGCCGAGCAGGAGGGGGCGGCCGGCCCGGGAGCGGTCAGCCCCAAAGAGGCCCCCGACAGCCCCTCCCCGGAGGACAGCCGCAGTCCCGCCGCCAGCCCGGAGGCCGTCGGCGGGCCCGGCTCGCCCGGAGACCCCGGGGGCGCCGGCGGCACCCCGCCACCCGCGACCACCACGGTCACCACGAAGCGGGAGGCCGCCAGCCGCAGCGCCAGCCGCAGCGTCAGCCCCGCCTCGGACAGCTCCGCGGCCGCCTCCAGCAGGCCCCCGAGCAGGTCCCCGAGCCGGCCCTCGAGCCGGCCCCGGGTGGTGGACCTCTCGGCCGAGGACGCCGTCAACGAGAGGTCCGGGTCCGAGTCCGCCGCCAACGAGCGCCCCGCCAGCAGCAGCAGCAGCTCCACCACCACCACCGCGGCGGGCGGCGCCGGCGGCGCAGTTCCCCCCCGGCTCCGCCTCAACCCCAGCCTGGCGACGGACCCCGCGGCCAGCGCCGGCGCCACCGCGCTGCCCCCTGGCGGCGCCCGCCGGGACTACCTGTCCGCGCTGCATCCCGCCATCCACTCGGCAGGGTCCGCGGGCGTCAGCGTCGTCCTGTCCGCGGCCGACCACGGTGAGGCCGAGATTAGTGGCGTAGCCCTGCAGGCCGTCAGCCGCGGCCTGTACCTGCCGCCCGGCGCCAGCCGCGCGGAGGCGGTGGCCGCCGCCGCCGCACTGCTGCCCGCCGCCCCCGCGCCGCCGCCCCCGGCCGCCGCCGCTGTCGCTGTCGCCGCCGCCGCCGCGCCCCCGCCGGCGCAGCCCCCGCAGCAGCCCGCGGTGGAGGCCGGCGAGGCTAGACAAGCAGCAGCCTTCCGGTGCGAGCCGTGCGGGATCCGGTACTCGTCGCTGAGCACGCTGGAGGCGCACCAGACCTACTACTGCGCGCACCGGCCCAACGCCCAGGGCCCCAAAGGCCCCATCGTGGAGGCGGACGAGAACCCCAGCCCGGGCGACAGCGGGGACCGGGCAGCCGAGGCCGCGGACGGCGAGGCGCCCGCCAAGCGGACCGGGCCAGCGGCGACCGCGGCAGCGGGGGCGGCAGGACCAGGCGCCCCCGGCGGCGCGCCCGCAGCCCCCAAGCAGTTCACGTGCCCGCACTGCTCGTACTCGGCCGACAAGAAGCTGTCGCTGAACAGACACATGCGCATGCACACCGCCTCCCCTCCGGCCGCGGTTGGCGCGGTGGCGCCGCCGCCCCCGCTGCCGCTGCAAGTGCAGCCGGGCGAGCCGGCCGACGCGGCCGCCTCCTTCCTGGACCGCTACTGCCAGGACTGCGACATCCGGTTCCACTCGCACAACACGCTGCGCGCCCACAAGCTGCACTACTGCGCCAACCGGCCCGTGCTCAAGGGCTCCGCGGGCACGGCCTCCTCCGAGTCGGCGTCGCCCTCCCCGGTGGACGGCGCCCCCGGCCCCGCCCTGCCCACGCGTGCGGCGGCTGGATCGCCGGGCCACGCGTCCGGCAACGAGGCGCTGCTGGCGCTGCCCACCAACCCGCCGCTGCTGGTGCCGTACGCGCTCCTGCAGGCCGCCAGCGTGGTGCAGGGCGCGGCCCTGACGGCGGCGCTCGGGGCCGGCGCGGCCGCCGCCCTCGGCGCCGCGTGCCTCCTCATGCCGGACGGCGTCCTGCAGCCCATCGCCACCGCCAACCCGCCCCCGGCGGCCCGCCCGCGGGCCCCCGCGAGTCAGCCGCCGCCGTCGCCGTCCCCGCAGCAGCAGCAGCCGGCCCCCGCTGTCTCTAGGCGCCACCGCGCCCCGAAGCAGACGTCCCCGGCGCCGGCGGCCACCACCACCCCGACTCCCAGTGCGGCAGCGAGCGCCCCGGCCGCCGGCGGGCTGGGGCCCCTGGACCTGAGCGTGCGGCGCGCCTCCGACTGCTCGGAGGAGGACGTCGACGAGGAGCTCCGCGTGCACGACACGGAGCACGAGGACATCGTGTGCGCGCCCAGCGTCGCCCTCATGCTCTCCGCGTCGTCGGCGTGCTCCTCCCCCTCCCCCGCGCCCACGCAGCACTCGCCGTCACCGCCGCCGCAGCACGCCTCCCGCAAGCGGCCACACTCGCCCGCGCTCTCCCCGACCGACAGGGGCCCGGGCGGCAAGAAGTCGCCGCGGCGGACTCCCAACGGCGTGGTGGCCGTGGGCGTGCCCAAGAAGGAGGCGCCGGAGCTCTCCCCCGGCCCCGGGCTGAGCCCCGGCCTGGGCCCCTCGCCCGTGCCCGTGTCGCTGCCCGCCCCCGGCCACGTCCCCGACCCCCAGCTTCTGCTCCAGCAGGTGCTGGCGGGTCGCGGGCTGCAGGGCCTCCAGGGTCTCCAGGGACTCCAGGGCCTCCAGGGCCTGCAGGGGCTCCAGGGCCTGCAGGGGCTGCCGCAGGGCCTGGCGCAGACCTCGCTGCCGCTGCTGCTGGGCGCCGCGCCCCTGGAGCTGGCGCTACGCATGGCGGCCGTGTCGGCTGTGTCCGCGGCGGAGCTCCAGCAGCAGGTGGTGGCCGCGCCGCCGCCGCCGCCCCCGCACGTCCACGTCAAGCACGGCGTGTCCAAGTGCAAAGAGTGCAACATCGTGTTCAACCACCACGAGAACTACTTGGCGCACAAGCGGCACTACTGCCAGTCCCGGCTGCAGGCCGCAGACCCGGCGCCCGCGGAGGCCGGCGCCGGCGCCAGCCCCGCCCCAACCTCTCGGTCCCCAACGGCCAGCTCGCCCCCGGAGCCGCAGCCGCCGCCGCCCGCGGCCGCGCCCCCATCCGCCACGCACACCCAGTACATCTGCGCCCGTTGCCAGATCAAGTTCACGTCGCTGGACAACCTGACGCACCACCAGGCGTACTACTGCCCCAAGCGGCCCTCCCAGGACGCCCCGCCCCCACCCGGCGCGGCCACCTCGCTCGCCTCCGCCCTCGCCGGCCCCGGCAAGGCCGCGGACGACAAGGCCAGGCGGCGATGCCCCAAGTGCAAGGTGTCCGTCCCCGGCGACCAGGCCTCCGCGCACCAGTGCGACGCGCTGGCGGCCGCGGGCAGCAGCTGGAAGTGCCCCCGCTGCCCCGTCACCAGCCCCACCATCTCGGCCGCCCAGCGCCACATCGAGACGCACGCCGGCATCAAGGCTTTCCGCTGCACCGTATGCGGCTACAAGGGCAACACCCTGCGGGGCATGCGGACCCACATCCGCACGCACCCCATCCCGGACGCGCAGGAGGAGAACTACATCACGTGCGTGATGGAGGACGACGCGGCTCACCCGGGCCTGGTGCCGGTGCCGACCCCCCTGGCGACCCCTCCCACGCCGCCCACCCCCGCCGCCGCCAGCGCCACGGACCTCTCCAGCCTGCCGGGCGCGACCCCGGACCCGGACCTCGAGCGCCAGTTCGCCTGCGACATGTGCGGCTTCACGTCCAGCCACCGGAGCAGCGTCCTGCACCACCTCAGACTCGTGCACGGCCAGGGCCAGGGCCACGGGCAGGCGAGGGCGCCGGACGAGGCCACGGCCCCGTTCGCCCACACCCCCTCCCGGACCCCAGATGACCAAAGAAGATCTTCGCACGCCGTGAACGGAGCGGACAGAGTGACCATCAAGGAGGAAAAGCTGGACGACGACTACATTTCGATAGATGATTTGAAAGTCAAGGAGGAGCCGGTGTTCGGCAGTGATGCTTCGGCACTCTGA
Protein Sequence: MPPPLLPPLLPSPAMQMREDEGWGSDGDPGAASAVVAAEQEGAAGPGAVSPKEAPDSPSPEDSRSPAASPEAVGGPGSPGDPGGAGGTPPPATTTVTTKREAASRSASRSVSPASDSSAAASSRPPSRSPSRPSSRPRVVDLSAEDAVNERSGSESAANERPASSSSSSTTTTAAGGAGGAVPPRLRLNPSLATDPAASAGATALPPGGARRDYLSALHPAIHSAGSAGVSVVLSAADHGEAEISGVALQAVSRGLYLPPGASRAEAVAAAAALLPAAPAPPPPAAAAVAVAAAAAPPPAQPPQQPAVEAGEARQAAAFRCEPCGIRYSSLSTLEAHQTYYCAHRPNAQGPKGPIVEADENPSPGDSGDRAAEAADGEAPAKRTGPAATAAAGAAGPGAPGGAPAAPKQFTCPHCSYSADKKLSLNRHMRMHTASPPAAVGAVAPPPPLPLQVQPGEPADAAASFLDRYCQDCDIRFHSHNTLRAHKLHYCANRPVLKGSAGTASSESASPSPVDGAPGPALPTRAAAGSPGHASGNEALLALPTNPPLLVPYALLQAASVVQGAALTAALGAGAAAALGAACLLMPDGVLQPIATANPPPAARPRAPASQPPPSPSPQQQQPAPAVSRRHRAPKQTSPAPAATTTPTPSAAASAPAAGGLGPLDLSVRRASDCSEEDVDEELRVHDTEHEDIVCAPSVALMLSASSACSSPSPAPTQHSPSPPPQHASRKRPHSPALSPTDRGPGGKKSPRRTPNGVVAVGVPKKEAPELSPGPGLSPGLGPSPVPVSLPAPGHVPDPQLLLQQVLAGRGLQGLQGLQGLQGLQGLQGLQGLQGLPQGLAQTSLPLLLGAAPLELALRMAAVSAVSAAELQQQVVAAPPPPPPHVHVKHGVSKCKECNIVFNHHENYLAHKRHYCQSRLQAADPAPAEAGAGASPAPTSRSPTASSPPEPQPPPPAAAPPSATHTQYICARCQIKFTSLDNLTHHQAYYCPKRPSQDAPPPPGAATSLASALAGPGKAADDKARRRCPKCKVSVPGDQASAHQCDALAAAGSSWKCPRCPVTSPTISAAQRHIETHAGIKAFRCTVCGYKGNTLRGMRTHIRTHPIPDAQEENYITCVMEDDAAHPGLVPVPTPLATPPTPPTPAAASATDLSSLPGATPDPDLERQFACDMCGFTSSHRSSVLHHLRLVHGQGQGHGQARAPDEATAPFAHTPSRTPDDQRRSSHAVNGADRVTIKEEKLDDDYISIDDLKVKEEPVFGSDASAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -