Basic Information

Insect: Megalurothrips usitatus
Gene Symbol: Rreb1
Assembly: GCA_026979955.1
Location: CM049607.1:5689582-5717043[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.5 3.4e+02 1.4 0.0 2 23 284 305 283 305 0.94

2 14 0.014 1.1 9.3 0.1 1 23 319 341 319 341 0.96

3 14 2.8e-05 0.0021 17.8 0.1 1 23 347 369 347 369 0.99

4 14 0.0059 0.45 10.5 0.3 2 23 470 492 469 492 0.96

5 14 0.0075 0.57 10.2 0.0 1 23 685 707 685 707 0.96

6 14 0.0015 0.11 12.4 0.6 1 23 716 738 716 738 0.98

7 14 0.012 0.91 9.5 2.8 1 23 744 767 744 767 0.97

8 14 0.11 8.6 6.5 5.8 1 23 1097 1120 1097 1120 0.95

9 14 0.0034 0.26 11.2 1.6 3 23 1335 1355 1333 1355 0.96

10 14 0.092 7 6.8 4.1 1 23 1361 1384 1361 1384 0.96

11 14 0.045 3.5 7.7 2.3 1 23 1463 1487 1463 1487 0.96

12 14 1.6 1.2e+02 2.9 5.8 1 23 1644 1666 1644 1667 0.94

13 14 0.011 0.85 9.6 0.5 3 23 1723 1743 1721 1743 0.93

14 14 0.0091 0.69 9.9 5.9 1 23 1749 1771 1749 1771 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.5	3.4e+02	1.4	0.0	2	23	284	305	283	305	0.94
2	14	0.014	1.1	9.3	0.1	1	23	319	341	319	341	0.96
3	14	2.8e-05	0.0021	17.8	0.1	1	23	347	369	347	369	0.99
4	14	0.0059	0.45	10.5	0.3	2	23	470	492	469	492	0.96
5	14	0.0075	0.57	10.2	0.0	1	23	685	707	685	707	0.96
6	14	0.0015	0.11	12.4	0.6	1	23	716	738	716	738	0.98
7	14	0.012	0.91	9.5	2.8	1	23	744	767	744	767	0.97
8	14	0.11	8.6	6.5	5.8	1	23	1097	1120	1097	1120	0.95
9	14	0.0034	0.26	11.2	1.6	3	23	1335	1355	1333	1355	0.96
10	14	0.092	7	6.8	4.1	1	23	1361	1384	1361	1384	0.96
11	14	0.045	3.5	7.7	2.3	1	23	1463	1487	1463	1487	0.96
12	14	1.6	1.2e+02	2.9	5.8	1	23	1644	1666	1644	1667	0.94
13	14	0.011	0.85	9.6	0.5	3	23	1723	1743	1721	1743	0.93
14	14	0.0091	0.69	9.9	5.9	1	23	1749	1771	1749	1771	0.98

Sequence Information

Coding Sequence: ATGTCCGAGGATGAGGCCCAGGGGCAGGGCCAGGCCCCGGCGCGCAGGGGCGGGACCGCGGGGGCCGCGGGGCCCGCGGGGGCGCTGAGGGAGGCGCGGGCCACGCGGCGCACGGCCACCGCGGCCGCGGGTCCGCGAGGGGCGGAGCGGGGGGCGGAGCCGGGCCGGGCCAAGACGGCGGCGCGGCCGGTGGTGGGGGGCCGGGTGGGGGGCGGCGCGAGCGCGAGCGCGGCCGGAGGGGAGGGCCGGCGGCGAGCCCAGCAGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCACCGGCTGCGCCTCCGCCGGCACCACACCCCGCCGCCGCCGCCGCCGCCGCCGCCGCAACCGCCGCAGCAACAGCAGGAGGCAGCGGCACCGCCAGAAGAGGGAGGAGGAGGAGGAGGAGAGGAGCGCCGGCCGCCGCCGCCGCGGCAGGAGAGGCAGAAGACAGCAGATGCATTTAGGtgctcgtccccggcggagcccgacGCCGAGGAGACCAGCCCGCGCTCCAGCCTGCTCGCCGGCCTCGAGGACAAGAAGCCGGACCCTGAGCCGGAGCTCGTCGCCGAGCCCGCCGTCGTGAAGGAGGAGAAGGAGGAGGAGGCCGAGGAGGCCGCCACCCCCGCTAGTCAGCCCCCCACCCCCGCCGCCATGACGACGGCCACCTCGCCGCCGCCGCCGCCCCCCGACACGGAGCAGGCGGCGCAGCAGCAGCCGCGCGCCGCCAGCGGCCCCGCCCACATGGAGGACGACGGCCACCTCACGCGGCCCGAGTCCGCGGCCACGACGGAGGCGTCGGCCACCGCCGCCGACGACGACGACCTGGCCGGCCGGCTCGTGTGCGCCGTGTGCGACGGCGTCCTGGCCAGCGACGTGGCCCTGGCCAGCCACATCCAGGAGCACGGCCTCAACCACACGGGCGCCGACGCGGAGCTGCTGGGCTTCGCGTGCCGCACCTGCCGGCGCGTCTTCGCCGACGCGGAAGTGCTCGACCGGCACGTGCTGTCCCACCCCGGCGAGCAGGTGTTCAAGTGCCCGCTGTGTGGACTGGCCCTCCGCACCAACGGGGGCCTGGCCCGGCACACCCGCCGCCACCTGGACGGGCTGGAGGGCGTCGCCGGCCACGCGGACCTGCTCCGACAGGGCCACGCCGCCAAGAGGCCGCACCAGAGCGGGGACGAGGCCGACTACGAGGTGGAGGCGAAGCGGAGGTCTCCGTCGACCGCGGGCAGTGACGAGGAGGTCGCCGTGCCCGCCGCCGCCGCCGCCGCCGCCCTCGCCCCCGCCGTGCCCCGCTTCACCTGCCCCGTCTGCCCGCCCACGCAGCCCTTCCGCGCCCAGTACCTGCCCGAGCTGGAGGCGCACCTGGAGCAGAGCCACAGCGACTACCGCGTGTCGTGCGAGCTGTGCGGCGGCTCCTTCCGCAGCGTCCGCGACCTCAACCTGCACGTGCACACGGCGCACCGGTCCGGCGGCAAGGGCGGCCGCGGCCGCGACGTGGTTGGCTTCAAGGACCTCACCTTCGTCGACTTCAGCAGCCAGAAGTTCGCGCACATCGCGCGCGCCGAGTGCGAGAAGAGCCTGCACCGCGCCGCCAGCCGCCTGCACCCGTTCCAGTGCGAGTGCGGCCTCGCCTTCCCCTGCGACTCGGCGCTCGCCATCCACCGGCAGGCGTGCCCCAACACGGTGTACGTGGACTCCCCCGCCGACCTGTCCCGCGGCCTCGCGCGGCCCCTGCTGGGCGCCGACCCCGGCGCGCTCCGGGCCGCCTCCCCGAAGGGCGACTTCCTCGCCAAGCTGGACCTGAGCCCGCAGGGCGCGGCGCACCACCTCCGCGCCGCGGCCGCCGGCGGCGTGCTCCCCTACGCGGACCGCGACCTCGCCGACATCCAGAGCATCCTGAGCGTGAGCGCGGCCAACGTCGGCGTCCCCGGACACCTCGGCCACCTCGGCCACGACCCCTGCGAGGAGCGCGAGGACCACGAGGAGCAGCAGGACGCGTTCGCCGCCGAGTTCCGGCGCATGAAGCAGCGCGGCGAGTTCCCGTGCCGCCTCTGCCCCGAGgtgttccccAACCTCCGCGCCCTCAAGGGCCACAACCGGGCGCACATGGCGGCCCCGGGGGCGGACGGCTACCGCTGCAACATGTGCCCGCACGCCGCGCTGGACAAGGTGGCCCTGCAGCGGCACATGCGCACCCACAACGGGGCGCGGCCCTACGAGTGCGCGCTCTGCCGGTTCGCGTTCACCACCAAGGCCAACTGCGAGCGCCACCTGCGCAACCGGCACGCCAAGTGCTCCCGCGACGAGGTGAAGAGCTCCATCATCTACCACCCGTCCGAGGACCCCGGCAACGACCCGGAGCAGCAGCGCGAGCTGCAGCAGCTGCAGCAGCAGCAGCAGCATCTCGTCAAGCTGGACGTGAAGCGGTCGCTGTTCCCCGACGCCATGATGCTGGAGGGCGAGGACGCGCAGCGCCGGCGGAGCCTCGACGTCGGCACCATGACGTCCGCGTCCGAGGACGACGCCGACGACCGCGTCGCGGACGAGCCCATGGAGGACCAGGACGAGCCCGGGCGGCAGTCGCCGCTCGACCTCAGCATGGTTCTGGACCTCAGCAAGAAGCGGGCGCCCAGCCCGTCCGACCTGGCCGAGGACGGCGAGGACGTGCCGGAGGAGGAGGACGACGAGGAGCCCGCCCCCGAGGACGAAGACGACCAGCCCCAGGACCTGTCGCGCAAGTCGACGTCGTCGACCGCGGAGCCGAGCGCCGCCGCTGAGCCCGCAGGCCTGCACCTCAACAACCAGTCCACGCCGCTGCAGTCGCCGGAGGCGGCCGCCACGGCGGCGGCGCTGCCGTTCCCACTGTACGTGAACCCGTACCAGACGGGGCTGCCGCTGCCCGGCCAGGGCCTCGGCCAGGGCCTCGCACCCGGCCTGCTCCCGTACTACCCGGGCCTGCTGCGCAGCCTGCAGCTCGGCCCTCTCGGCCAGGTCGGCGGCCTCGTCCTGGAGCCCATGCGCCTGCTGCAGCGCCCTCCCTTCATGCCCGCTAACGTCGCCGCCGACGGCGCCGTGCCCATGGCCGACATGAAGGACGACGGCGTGCCCTGCCCCGCCGCCAGCCCCAAGTCGGAGCGCAGCTCCGCGTCCGAGTCCCAGCAGCAGCACTCGGCCAGCGGCGGCAGCAGCAGCGGCAGCGGCAGCAAGATGGTGATGAAGAACGGCGTGCTGATGCCCAAGCAGAAGCAGCGCCGCTACCGCACCGAGCGGCCGCACGTGTGCGAGCACTGCTCGGCCAGGTTCACGCTCTCCTCCAACCGGGAGCGGCACGTCAAGCACCAGCACCCGCAGTTCTGGAGCCAGAGGCACCGCGGGCCCGCCGCCGGCAACCCGGGCACGCCGCCCACCCCCAACGCCCACACCCCCGCCCCGGACCACGCCTCCACGCCGCTGCGGGCGCCCTCCGTCGACCTGGTCGCCTCCTCCAAGCACGAGGAGGACGACGAAGACGAGGGTCTCGTCATCGACGAGGAGCGGCCGTCCAGCGAAGACCACCACGACGACGACGGCGTTGACGGCGACGCCGAGGACGAGGGCCACGTCAAGGCGCCCGCGCCCGCCTCGGCGCCGACGTCGGCCGGCGAGGACCTAGCCAGCGTCTCGCGGCTGCTGAACAACACCTCCATCCAGTCGTTCCGGCAGTACCTGCGCGACGACGACCTCCACCATCACCACCACCGCGCCGCGGCCGTCCTCCCGCACCCCGGCACGCCCTCCGGCAGGGAGGCCGTCCCCGCCGGCAGGGACGCCGTCTGCCCGGAGGAGGGCCTCGGCAGCGAGGAGGACGTGGACGAGGAGGGCCTGGTGGCCGGCTCCCCCAGCGAGGGCAACAACTCTGGCAGCGAGCAGGACAAGTCCGAGTCGGAGGCCGCGGCCGCGCCGCCCAAGAAGAAGAGCGCGTACTCGCTGGCGCCGAACCGCGTGTGCTGCCCGTACTGCTCGCGGAAGTTCCCCTGGACGTCGTCGCTGCGCCGCCACGTGCTCACGCACACCGGGCAGAAGCCGTACAAGTGCACCTTCTGCCCGCTGCTCTTCACCACCAAGAGCAACTGCGACCGCCACCTGGCCAGGAAGCACAGCAACAAGAAGGACGCCAACAGCAGCAGCAGCAGCGGCGTCAGCAGCACCCCCAACAGCAGCACCACGAGCGTGTCCCCCGGCGGCTCCGCCAGCAGCGGCTCGCCGCCGGAGCCGCTCCTAGTGCGCGCGTCGGCGCTCAGCCCCCAGGGCCACCACGGTCTCGGCCACGTCCTCGGGCACCCGCTCCGCGGCCTCGCCCAGTACCCGCTGAGGAACGTCCCCGAGCGGCCGTACCGCTGCCGCCACTGCCCGAGCTCCACGTTCGCGACGCTGAACAACCTGCGCAAGCACGTCGCCACCAAGCACACGGGCGCCTCCCTGGAGAGCTGCATCCTGCCCGGCGACGTGAGCGGGTACGAGAGCCACGGCAGCATCAGCGACGCGGAGCACGGCGACGACCGGGTCGCCGACGACGAGAAGAAGGCCGACGTGAAGGTGCCCGTGTTCAGCCCCAGCCTGGAGCAGCCGTTGCCGCTCAGCCTGTGCAAAGCCGAGAGGAGCGAGGACGTCCAGCACCTCGCCGTCAAGCCGGAGAGGATGGAGGTCGCGGAGGAGTCGGCGATCAACCTGCACCGGACGACGGACACCCCGGACCGACCCACGGCGCCCGTGGTCCCCGACATCATGCGGGAGGCGCACAACAGCCTCATGTCCTCCACCAGCCCCGTCTCCGGCACCCCCGCCGCCCCCATCTCCGCCCCCGTCGTCAGCATCCCGGAGGGCGTGTCCCGGACGTCGGAGTCCTCGGTGTCGCTGCCCTCCTCCGAGCTGCCCTTCAAGTGCCACCTCTGTGACGGCAGCTTCACGGAGCGCCAGGAGTGCCTGGACCACATCAAGCTGCACCACGCCGCCGAGTACGACGTGCTGCTGTCCAAGGGCGCCCTGGAGCTGAGCGTCGCGCACTCCCCGGAGGACAACGGCGCCGCCATGGACGAGAGCCACCACGCAGACGGCGAGAACATCGAGCACGTGCGCGGCAAGTTCCCGGACTACGCCAACCGCAAGGTGATGTGCGCCTTCTGCATGCGCCGCTTCTGGTCCGCCGAGGACCTGCGCCGCCACATGCGCACGCACACCGGCGAGCGGCCCTTCTCCTGCGACGTCTGCCGGCGGCGCTTCACGCTCAAGCACAGCATGCTGCGCCACCGCAAGAAGCACAACGACCTCGCCAACAACAACAACAACAACAGCCTGAGCGCGCCGCTGGTCAGCTCGGCCGGCCCCGAGGACCTGTCGGCGTCCGCGGCCAGCGGCGACGAGGACGGCTTCAAGCACGCGCCCTCGCCCGCCGACCTCCTCCTGCACCACGTCAAGATGACCAACCACAACAACAACAACATCACGGGCGTGAGTAAGATGCTGATGGCCATCTGCGACAACCAGGTCAACCTCAAGCGCAACTTTCGCAGGAAAGAAGAGGAAGATAGTGGCCTCATAAGCAATCTCCTGGGGGTGTCGCGGTCGTCCGTCGCCGTCAGGAATCTCCGAGAACCCCGTAACCGTGCGCGGCCGGGGGACGGGTTCGACGGCGTTCTCGGTGAGGCCGCCCTGCCCGAGTCCGCCGGGTTCGACGGCGACCCCACGAGGCCGCCGCGCATAGCGATCGTGTGCCAGCTATTTTAA
Protein Sequence: MSEDEAQGQGQAPARRGGTAGAAGPAGALREARATRRTATAAAGPRGAERGAEPGRAKTAARPVVGGRVGGGASASAAGGEGRRRAQQPPPPPQQQQQHRLRLRRHHTPPPPPPPPPQPPQQQQEAAAPPEEGGGGGGEERRPPPPRQERQKTADAFRCSSPAEPDAEETSPRSSLLAGLEDKKPDPEPELVAEPAVVKEEKEEEAEEAATPASQPPTPAAMTTATSPPPPPPDTEQAAQQQPRAASGPAHMEDDGHLTRPESAATTEASATAADDDDLAGRLVCAVCDGVLASDVALASHIQEHGLNHTGADAELLGFACRTCRRVFADAEVLDRHVLSHPGEQVFKCPLCGLALRTNGGLARHTRRHLDGLEGVAGHADLLRQGHAAKRPHQSGDEADYEVEAKRRSPSTAGSDEEVAVPAAAAAAALAPAVPRFTCPVCPPTQPFRAQYLPELEAHLEQSHSDYRVSCELCGGSFRSVRDLNLHVHTAHRSGGKGGRGRDVVGFKDLTFVDFSSQKFAHIARAECEKSLHRAASRLHPFQCECGLAFPCDSALAIHRQACPNTVYVDSPADLSRGLARPLLGADPGALRAASPKGDFLAKLDLSPQGAAHHLRAAAAGGVLPYADRDLADIQSILSVSAANVGVPGHLGHLGHDPCEEREDHEEQQDAFAAEFRRMKQRGEFPCRLCPEVFPNLRALKGHNRAHMAAPGADGYRCNMCPHAALDKVALQRHMRTHNGARPYECALCRFAFTTKANCERHLRNRHAKCSRDEVKSSIIYHPSEDPGNDPEQQRELQQLQQQQQHLVKLDVKRSLFPDAMMLEGEDAQRRRSLDVGTMTSASEDDADDRVADEPMEDQDEPGRQSPLDLSMVLDLSKKRAPSPSDLAEDGEDVPEEEDDEEPAPEDEDDQPQDLSRKSTSSTAEPSAAAEPAGLHLNNQSTPLQSPEAAATAAALPFPLYVNPYQTGLPLPGQGLGQGLAPGLLPYYPGLLRSLQLGPLGQVGGLVLEPMRLLQRPPFMPANVAADGAVPMADMKDDGVPCPAASPKSERSSASESQQQHSASGGSSSGSGSKMVMKNGVLMPKQKQRRYRTERPHVCEHCSARFTLSSNRERHVKHQHPQFWSQRHRGPAAGNPGTPPTPNAHTPAPDHASTPLRAPSVDLVASSKHEEDDEDEGLVIDEERPSSEDHHDDDGVDGDAEDEGHVKAPAPASAPTSAGEDLASVSRLLNNTSIQSFRQYLRDDDLHHHHHRAAAVLPHPGTPSGREAVPAGRDAVCPEEGLGSEEDVDEEGLVAGSPSEGNNSGSEQDKSESEAAAAPPKKKSAYSLAPNRVCCPYCSRKFPWTSSLRRHVLTHTGQKPYKCTFCPLLFTTKSNCDRHLARKHSNKKDANSSSSSGVSSTPNSSTTSVSPGGSASSGSPPEPLLVRASALSPQGHHGLGHVLGHPLRGLAQYPLRNVPERPYRCRHCPSSTFATLNNLRKHVATKHTGASLESCILPGDVSGYESHGSISDAEHGDDRVADDEKKADVKVPVFSPSLEQPLPLSLCKAERSEDVQHLAVKPERMEVAEESAINLHRTTDTPDRPTAPVVPDIMREAHNSLMSSTSPVSGTPAAPISAPVVSIPEGVSRTSESSVSLPSSELPFKCHLCDGSFTERQECLDHIKLHHAAEYDVLLSKGALELSVAHSPEDNGAAMDESHHADGENIEHVRGKFPDYANRKVMCAFCMRRFWSAEDLRRHMRTHTGERPFSCDVCRRRFTLKHSMLRHRKKHNDLANNNNNNSLSAPLVSSAGPEDLSASAASGDEDGFKHAPSPADLLLHHVKMTNHNNNNITGVSKMLMAICDNQVNLKRNFRRKEEEDSGLISNLLGVSRSSVAVRNLREPRNRARPGDGFDGVLGEAALPESAGFDGDPTRPPRIAIVCQLF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -