Musi001646.1
Basic Information
- Insect
- Megalurothrips usitatus
- Gene Symbol
- -
- Assembly
- GCA_026979955.1
- Location
- CM049601.1:2874576-2881868[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00049 0.037 13.9 0.0 4 23 42 62 42 63 0.94 2 13 0.0005 0.038 13.9 0.1 2 23 97 118 96 118 0.96 3 13 0.25 19 5.4 2.4 1 23 123 145 123 145 0.97 4 13 6.6e-06 0.0005 19.8 0.5 1 23 151 173 151 173 0.96 5 13 3.7e-06 0.00028 20.6 3.8 1 23 179 201 179 201 0.98 6 13 0.00017 0.013 15.3 0.1 1 23 207 230 207 230 0.97 7 13 1.1 82 3.4 0.1 1 14 236 249 236 250 0.91 8 13 1.4e-06 0.00011 21.9 0.9 3 23 255 275 254 275 0.99 9 13 0.21 16 5.6 0.2 1 17 282 298 282 300 0.93 10 13 0.00015 0.011 15.6 0.2 5 23 300 318 297 318 0.95 11 13 0.00041 0.031 14.2 1.6 3 23 326 346 324 346 0.98 12 13 3.2e-05 0.0025 17.6 0.3 3 23 354 374 352 374 0.98 13 13 0.016 1.2 9.2 0.1 1 20 384 403 384 406 0.95
Sequence Information
- Coding Sequence
- ATGCCCCCGCTCACCTACCTCAAGACCTTCAACGCCGAGGCCCGAGGCCCTGGTCTGGCGCTCGCCCGGCGAGAGGCCGCCATCCGGGCCCACTCCAACGAGGCCGAGGCCCTGGCTGGCGCCCCGGAGTGCCCCAAGGAGTTCGCGAGCGCGAATGCTCTTCAGTCCCACATCCGCGCCGTTCACCACGAAGTGCTCAAGGGCCTTTGGAGTCCCCGGGGAGACTCCGCCAgcgcgacggagcaggcggacggcgacggcgacggcgccaggctggcggacaagctggtgtgccccgagtgcggcatgcggtgcccgaacccggtggcgctgtccatgcactacggcacgcacaccaggcgcgagcaccggtgcggcgtctgccaggcggtgcactgcagcgcctacgccctcgggctgcacctccgcacgcacacgggcgacaagccgcacgagtgcgacgtgtgcggggcgagcttctcccagctggccaacatgcagaagcaccgcctgctgcactcgggcgccaaggcgttcgagtgcgcggtctgcaaggacaagttctcccgcaaggagcacctgacgcggcacatgcgccggcacacgggcgagaagccgtacaggtgcagcatctgcctcaaggcgttcgcccgccgcagccccataaaggcccacgtgctgatggtgcacaccgagaacaggccgttcaagtgcgaggcgtgcgagctgcggttcgccacctccgacgccaggccgcacggctgcaccgtgtgcggcaagcggttcaagaggctgaccgacctccgcctccacgtgcgcagccacacggcggacaggccgtcctaccagtgcgcggtgtgcgagggcaagttcgtctcggcgtactccctcaagtgccactgcccgaagaggttctcgcagaagggcaacctggacgcgcaccgcgccgtacactccggggataagcggttcggctgcacgctctgcggcaagaagtgcagcgacggcgtgaaactacgcgcgcacctgcggcagcacacgggggagaggccgttcggctgcacggagtgcggcaagaggtacatgtcggccacggggctccgcttgcacctgcgggtgcacacggatgggGAGGCGGGGCCGGGCAGCTTCAGGTGCTCCGAGTGTCGGGCGACGTTCGCCAGCGACGCGGGCTTGCTCGCGCACCTCTGGGATCACATTCGGGGCAGGCCGGAGCCCCCGTCGTAG
- Protein Sequence
- MPPLTYLKTFNAEARGPGLALARREAAIRAHSNEAEALAGAPECPKEFASANALQSHIRAVHHEVLKGLWSPRGDSASATEQADGDGDGARLADKLVCPECGMRCPNPVALSMHYGTHTRREHRCGVCQAVHCSAYALGLHLRTHTGDKPHECDVCGASFSQLANMQKHRLLHSGAKAFECAVCKDKFSRKEHLTRHMRRHTGEKPYRCSICLKAFARRSPIKAHVLMVHTENRPFKCEACELRFATSDARPHGCTVCGKRFKRLTDLRLHVRSHTADRPSYQCAVCEGKFVSAYSLKCHCPKRFSQKGNLDAHRAVHSGDKRFGCTLCGKKCSDGVKLRAHLRQHTGERPFGCTECGKRYMSATGLRLHLRVHTDGEAGPGSFRCSECRATFASDAGLLAHLWDHIRGRPEPPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -