Musi010508.1
Basic Information
- Insect
- Megalurothrips usitatus
- Gene Symbol
- -
- Assembly
- GCA_026979955.1
- Location
- CM049594.1:5958688-5965038[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 1.8e-05 0.0014 18.4 0.5 1 23 110 132 110 132 0.99 2 35 0.069 5.2 7.2 1.6 2 23 139 160 138 160 0.94 3 35 0.001 0.077 12.9 0.5 1 23 166 189 166 190 0.95 4 35 0.87 66 3.7 0.2 2 23 196 218 195 218 0.92 5 35 0.0012 0.093 12.7 0.0 2 23 244 265 243 265 0.96 6 35 0.0002 0.015 15.1 3.2 1 23 271 293 271 293 0.98 7 35 5.6e-05 0.0043 16.9 0.7 1 23 299 321 299 321 0.99 8 35 0.002 0.15 12.0 3.0 1 23 331 353 331 353 0.99 9 35 0.0024 0.18 11.8 0.2 1 21 380 400 380 401 0.95 10 35 0.65 49 4.1 5.6 1 23 417 439 417 439 0.95 11 35 0.0019 0.14 12.1 2.5 1 23 476 498 476 498 0.98 12 35 0.00024 0.018 14.9 0.2 1 21 546 566 546 567 0.95 13 35 0.0064 0.49 10.4 1.4 1 23 611 634 611 634 0.95 14 35 0.0038 0.29 11.1 0.4 1 23 653 675 653 675 0.97 15 35 0.1 8 6.6 0.5 1 23 741 763 741 763 0.96 16 35 3.4 2.6e+02 1.8 4.8 1 23 783 805 783 805 0.96 17 35 7.9 6e+02 0.7 0.7 1 23 833 855 833 855 0.90 18 35 0.0019 0.15 12.1 1.0 1 23 884 906 884 906 0.98 19 35 0.1 7.7 6.6 0.4 1 23 923 945 923 945 0.92 20 35 0.00046 0.035 14.0 0.1 2 23 1064 1085 1064 1085 0.97 21 35 0.18 14 5.8 1.2 1 19 1105 1123 1105 1127 0.86 22 35 0.11 8.1 6.6 0.1 1 20 1206 1225 1206 1227 0.96 23 35 0.027 2 8.5 2.3 1 23 1252 1274 1252 1274 0.98 24 35 0.14 11 6.2 1.0 1 23 1296 1319 1296 1319 0.86 25 35 0.0037 0.28 11.1 1.2 1 23 1345 1367 1345 1367 0.98 26 35 3.1 2.3e+02 2.0 0.1 2 23 1394 1416 1393 1416 0.90 27 35 0.0017 0.13 12.2 0.2 1 23 1439 1461 1439 1461 0.93 28 35 0.0066 0.5 10.4 0.3 1 21 1471 1491 1471 1491 0.97 29 35 0.00036 0.027 14.3 1.2 1 23 1512 1534 1512 1534 0.99 30 35 0.0016 0.12 12.3 0.1 1 23 1541 1563 1541 1563 0.95 31 35 0.00043 0.033 14.1 0.0 1 23 1596 1618 1596 1618 0.98 32 35 2.5e-07 1.9e-05 24.2 3.3 1 23 1624 1646 1624 1646 0.98 33 35 0.0043 0.33 10.9 0.3 1 21 1652 1672 1652 1673 0.97 34 35 5.6e-06 0.00043 20.0 2.9 2 23 1695 1716 1694 1716 0.97 35 35 0.0011 0.081 12.8 1.5 1 23 1722 1745 1722 1745 0.98
Sequence Information
- Coding Sequence
- ATGACGCTCACGCCCTCCTCCTCCTCCTTGCCCGCAGGTTTGCTCATCAACTCGGTGGTCTCGCTGTACCGGCCCGGCCCGCCCCACCCCGCGGACTGCGAGTACGAGATAGAGTACGACGAGTGGGACGACGACTGGGCCGCCCAGCACCCCGCCGACGACCCGGAGCATGACGACCTGCAGCCCGTCGTGGTGCTGGAGAAGATCCCCGTGGGGACGCAGGCGCCGCCCCCGCGCTTCCCCGGCGACGCCGACGGCTTCCTGGCGCCGCTGGCAGCCGGCGGCCCGGGCAGGCGGCCGGGTGTGGGCTCCCccagcgtgcggccgtaccggtgcgaggcgtgcgaggccagcttcaccagcaagacgtccctgctggtgcacatgcggcgccacacgggcgagaagcccttcctgtgcgccttctgcccgcgccgcttccgccacagcggcgccaagtccgcccacgagcgccagcactccggcggcctccgcttctcctgcgagctgtgcggcggccgcttccgcctggccaaggccctgtcggcccacatgcgcGACCAGCATCACCGCGAGCGCCCGCTCAAGTGCACCACCTGCAACGCCCTGCTCGAGTCGAAGGCCGCGCTCGAGCACCACGAGGAGGTGGAGCACGGCATCCTGCCGCCGCCCGAGCTGCCGCCGCACCTGCCGCACCACGAGGGCGACGCGGGCGCCAAGCAGCCCACGCCCTGCTTCGTGTGCGACAAGGTGTTCCCCTCGGCCAACGCCATGTGGGCGCACTCGCGCGTGCACGGCTCGGGCGGCCGCTTCCACTGCAAGCAGTGCCCGCTGCACTTCGCGTCCTGGATGAGCCTGCGCAGCCACCTGCGCGTGCACAGCAAGACGCTGGCCTTCCGCTGCAAGCTGTGCCCGCTCCGCTTCGCCGCCCGCAGCTCGCTGTTCGCCCACCTCAAGACGCACGACCGCCAGCAGGGCAGCAACCTGTACTTCCGATGCAGCAAGTGCCTGGAGCGCTTCGTGGGGCGCAAGAGCCTCCACGCGCACCTCAAGACGCACAGGGAGCGGGACGGGGGACTCGAGGTGGAGCAGGAGGAGCCCGCGGTGACTAGCCAGGCCGGGGACCCAGTCAAGACGTACCCGTGCCCGACCTGCCCGCTGGTGTTCGACAAGTACAAGTCCCTGTGGAGCCACCGCAAGCGCGGCTGCCCCGTCCTCGCCGCCGCCCCCCGCCCGGCCAAGGCCGGCTTCTCGTGCGGCAAGTGCAGCATGCGCTTCAGGACCAGGAAGGAGCTGTACTGTCACTCGCAGACCCACGCCGTCAAGCTGGAGCCCAACACTGAGGCCGAGACTGAGACAGAGGCCCCGGCCGAGGAGGCGGACGAGGGCGAGGAGGGCCGCGCCGCCACCAGCCCCGGCAAGACGTTCCGCTGCGGCAAGTGCTCGCAGCCGTTCCCCGACAGGAAGACCCTCCACGTCCACTCCAAGACCCACTCCGGCGCCATGGTGGTCATGAGCGTGGACGACGACGCTGCTCTGAGCGAGGGTCCCGGCGCCGACGCCGACGCCCCCCCGCACGGCGACGACCGCCCCGCCAAGAAGCTCAAGGGCTCCAAGGTGTACGGCAAGAACTCGTTCCGCTGCGGCAAGTGCGGCCGCGCGTTCCGGGGCAGGAAGGGCCTCTGGGCGCACCGCAAGATGAACATGTGCGTGCCGGGGGCCGACGACGCCGAGGAGCCGCCGACGCCGCCCTCCACGCCCGCCACGCCCCTCTCGTCCAGTCCGCAGTCCGCGGCGGCCGCCGCCACCGGGAGCTCCAGCAGTAAGCTGTTCCGCTGCCGGAAGTGCCCGGAGGTGTTCGCCGACAAGAAGAGCCAGATGGTGCACCACGAGAGGGTGCACTCCGGGCACACCAAAACTGTGATCAAGGTGGAGCCCGAGACCAAGCCAAAGAAGTACCGCTGTGCCAAGTGCCCGAAAGTGTTCCCCGACGCCGACAGTCACTGGCTGCACTACAAGGTGCACATGGAGGACACGACTGAAACCAGGCTGTTCGAGATGGCCAACCTGACTGATGATTCTCAGCGCCCACCCTGTTCAGAGGAGTTCGAGGATCAGGCGAGCCACTGGTGGCACTACCGCGTGCACGTGGCGGGCGACACGCCCGAGGAGACGTGCCGCGCGGAGCCGGCCGGCGGGCTGGACCCCCTGTCCAAGTGGTTCCGCTGCAGCGAGTGCGCCGAGGTGTTCCCCGACAGGGCCCTGCACTGGCAGCACTTCAGGGTGCACGTCGGGGACGTGGCCGCGATCTGCGAGCCGGCGGAAGAAGGCCCCACAGGCAAGGGCTACCGCTGCAAGCAGTGCGCGGAGACCTTCCCGGACGAGAGGTGCCACTGGATGCACTACAAGACGCACGTGGACACGCCCGCCATGGAGCTGTACGACCTGGTGAGCGCCCTGAACGGGGAGGAGCCGGACGGCGGCGCCGCTCTCCAGTACCGCTGCCGGCGCTGCCCGGACGTCTTCGCGGACCTCGAGAGCCACTGGTGGCACTTCCGCGAGCACTGCCAGACTGAAGCCGCGGAGCCTGGCTGCACCGAAGAAATAGTTCTTGCTGAAGACCAAACAGACCCGTTGTCCGACAAGTCGTTCAAATGCTCCAAATGCTCCGAGGTGTTCACCGACGAGAGGACTCGCTGGTGGCACTACCGGGGACACTCCGCCGACGTCGCGGACTCCTTCGAGGCGGTGGAGTCGCCGACGGAGTACAGTTGCGCCAAGTGCCCGGAGACCTTCCCCGACGAGGACAGCCACTGGTGGCACTTCCGTGACCACTTCCTCGCGGTCGGCGCGGAGGTGGCCGAGGAGCTGTGCGAGGTGCTCGTCAACGGCCATCTGAACGGGGCGGACACGCCGGCCGACGCCGGCGGCCCGGTCCGGTGCAGAAAGTGCGCCCAGGTGTTCCCGGACCCTGAACGCCACTGGGACCACTACCAGGAGCACTGGGACAGCCGTCCGTGCGAGGAGGTGGACCTGGAGGCGCGCGAGGCTCCGCCCGACTCCCTCCGCTGCCTCACCTGCGACGCCGAGTCGGCTGACCTGGAGAGTCACTGGTGGCACTACCGGAGCCACATGGACGCGGCCGCCCTTGAAGACGCCGTCGAAGAACTTCGCGTCCCCGTCGTGCCCCGCTGCTTCGAGTGCGCCGAGACGTTCCCCGACGCGGACGCGCTCTGGCGGCACTACCGCCAGCACGTCCACGAGGACGTCTGCGAGGAGGTGGTGGAGTCCGAGAAGCCCGAGGCCAAGCGGTACCCCTGCTCCAAGTGCCCGGAGGTGTTCCCGGACCGCCGCAGCCGCTTCCTGCACTGCGCCGTGCACGTGACACCGCGTGCCGCCGCCGGCCCCGCGCCTCCGCCCGCCTCCCTCCTGGACCCGGACCAGCCGCGCGGCTACCAGTGCAACGCGTGCCGGGAGATCTTCCTGGACACGGACAGCCACTGGTGGCACTACAAGACCGTGCACGACCCGGGCGCCGAGTCGGTCGGCCCGGACACGTACCTCATCGTGGACCTGACCGACAACCCGGAGGAGGACCCCCTGACCTGCAAGCGCCACCAGTGCACCGAGTGCCCGGCCAAGTTCGCGGGCCTCAAGGCGCGCCGCCGGCACATGTGGGAGGAGCACGGCGTCGGTGACCCGCTGGACGCGCCGTCGGACGCGGCCGAGGAGCGGTCCTCGGCCAAGGCCCGGTACCACTGCAGCAAGTGCCCCGAGGCGTTCCCGGACCGAAAGAGCCACTGGTGGCATTACCGCGTCCACACGAGTGCGCCCGAGGCCGAGCCCCACGCCGTCGAGGTGTCGGACGCGCCCAAGGCGAAGGGCTACCGCTGTAGCAAGTGCGAGGAGGCGTTCCCCGACCGCAAGAGCCACCTTGTGCACTTCCGTGCCGCGCACGGCGCCTCGACGGACACGTCGGAGGTGGCCGACTCCATCGAGGACGTGGACGAGGAGAAGCCCAGGGCGAGGGAGTTCCGCTGCAGCAAGTGCCCGGAGGTGTTCCCCGACCGCAAGAGCCACTGGTGGCACTACCGAGTCCACACCGACCCGGAGTTCAGCGCCTCGCTGACGGACGAGAAGGGTGCCGAGGAGAAGGCGGAGGCCGCCGCCGGCAGGATCCGGTGCGGCAGGTGCCTGGAGAGCTTCCCGGACCGCAAGGCGCACTGGGCGCACGTGAGGGCGGCCCACAGCGAGGACGGCGCCGCGGACACCCCGGAGCCGGAGCCCCACCCGAGCCTGCCGGCCTGGCGCCGCTACAAGTGCCCCCGATGCCCCCAGAGGTTTAGTAACCGCGTCAGATTGGCCCTCCACGAAGGGATCCATACTAGGGGAAACGACGACGGCTTTAAGTTCAAGTGCTCCGTCTGCTCGCTGACATTCCCCTACGGCATCAACCTGTTCAACCACATGAATCCCGACCGCGTCCTGAACGCCGGTTCCGGCGTCGGCGCCGCTTCACCGGGCACCCGCTCCTTCAAGTGCAGCAAGTGCCCGGCGCGCTTCAGCTCCCGCCGCGTGCTCTGGGCGCACTTCAAGACCCACAGGCTCACGAACCGCATGTACCCGTGCGCCGAGTGCGGCGCCAAGTTCAACGCCAGGGGCCACCTTCGCGCACACGCGGAGCTCCACCGCAAGGCCGACTGGGAGGGCCAGGAAGGGGCGGAGCCGGGCGCGTCGGTCGCACCCTCCTCCCCCTCTGCGCCGTCCTCACCCAGCAGCGAGGGCTTCCCgtgcggcaagtgcgaccaggtgttcgcgtccatggcgtccgccagggcgcaccagcgcgtgcacgcctctgtcaagcccttcaagtgcaagcagtgcggccaccgcttcaccaacgccagcaacctgctgcgccacatgaaggcccacttggcgcgccaggcgtacaggtgtcgccactgccgcagggagttcccgACGGCCGCGGCACGCAAGGCGCACATCCGTTGGTCCCAGATGGCCATCGCCGCGTTGGCGAACCTCCCTCCCCGGCGCGTGCCCCGGCAGGTGCTGCGCtgcgaccactgcgactacagctgcccgcggccggcggacctgcgcaagcacctgcgcacccacaccggcgagcgcccctacaagtgcctgttctgcgaccgcggcttcggcgacatctctaaccggcacgcgcacatgcgcaagtggcacccggccgagaTGGTGGAGATGACTCAGAACAGCCGCTGA
- Protein Sequence
- MTLTPSSSSLPAGLLINSVVSLYRPGPPHPADCEYEIEYDEWDDDWAAQHPADDPEHDDLQPVVVLEKIPVGTQAPPPRFPGDADGFLAPLAAGGPGRRPGVGSPSVRPYRCEACEASFTSKTSLLVHMRRHTGEKPFLCAFCPRRFRHSGAKSAHERQHSGGLRFSCELCGGRFRLAKALSAHMRDQHHRERPLKCTTCNALLESKAALEHHEEVEHGILPPPELPPHLPHHEGDAGAKQPTPCFVCDKVFPSANAMWAHSRVHGSGGRFHCKQCPLHFASWMSLRSHLRVHSKTLAFRCKLCPLRFAARSSLFAHLKTHDRQQGSNLYFRCSKCLERFVGRKSLHAHLKTHRERDGGLEVEQEEPAVTSQAGDPVKTYPCPTCPLVFDKYKSLWSHRKRGCPVLAAAPRPAKAGFSCGKCSMRFRTRKELYCHSQTHAVKLEPNTEAETETEAPAEEADEGEEGRAATSPGKTFRCGKCSQPFPDRKTLHVHSKTHSGAMVVMSVDDDAALSEGPGADADAPPHGDDRPAKKLKGSKVYGKNSFRCGKCGRAFRGRKGLWAHRKMNMCVPGADDAEEPPTPPSTPATPLSSSPQSAAAAATGSSSSKLFRCRKCPEVFADKKSQMVHHERVHSGHTKTVIKVEPETKPKKYRCAKCPKVFPDADSHWLHYKVHMEDTTETRLFEMANLTDDSQRPPCSEEFEDQASHWWHYRVHVAGDTPEETCRAEPAGGLDPLSKWFRCSECAEVFPDRALHWQHFRVHVGDVAAICEPAEEGPTGKGYRCKQCAETFPDERCHWMHYKTHVDTPAMELYDLVSALNGEEPDGGAALQYRCRRCPDVFADLESHWWHFREHCQTEAAEPGCTEEIVLAEDQTDPLSDKSFKCSKCSEVFTDERTRWWHYRGHSADVADSFEAVESPTEYSCAKCPETFPDEDSHWWHFRDHFLAVGAEVAEELCEVLVNGHLNGADTPADAGGPVRCRKCAQVFPDPERHWDHYQEHWDSRPCEEVDLEAREAPPDSLRCLTCDAESADLESHWWHYRSHMDAAALEDAVEELRVPVVPRCFECAETFPDADALWRHYRQHVHEDVCEEVVESEKPEAKRYPCSKCPEVFPDRRSRFLHCAVHVTPRAAAGPAPPPASLLDPDQPRGYQCNACREIFLDTDSHWWHYKTVHDPGAESVGPDTYLIVDLTDNPEEDPLTCKRHQCTECPAKFAGLKARRRHMWEEHGVGDPLDAPSDAAEERSSAKARYHCSKCPEAFPDRKSHWWHYRVHTSAPEAEPHAVEVSDAPKAKGYRCSKCEEAFPDRKSHLVHFRAAHGASTDTSEVADSIEDVDEEKPRAREFRCSKCPEVFPDRKSHWWHYRVHTDPEFSASLTDEKGAEEKAEAAAGRIRCGRCLESFPDRKAHWAHVRAAHSEDGAADTPEPEPHPSLPAWRRYKCPRCPQRFSNRVRLALHEGIHTRGNDDGFKFKCSVCSLTFPYGINLFNHMNPDRVLNAGSGVGAASPGTRSFKCSKCPARFSSRRVLWAHFKTHRLTNRMYPCAECGAKFNARGHLRAHAELHRKADWEGQEGAEPGASVAPSSPSAPSSPSSEGFPCGKCDQVFASMASARAHQRVHASVKPFKCKQCGHRFTNASNLLRHMKAHLARQAYRCRHCRREFPTAAARKAHIRWSQMAIAALANLPPRRVPRQVLRCDHCDYSCPRPADLRKHLRTHTGERPYKCLFCDRGFGDISNRHAHMRKWHPAEMVEMTQNSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -