Musi010502.1
Basic Information
- Insect
- Megalurothrips usitatus
- Gene Symbol
- -
- Assembly
- GCA_026979955.1
- Location
- CM049594.1:5947248-5953405[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.27 20 5.3 1.4 2 21 114 133 113 135 0.93 2 27 0.0029 0.22 11.5 1.8 1 23 141 163 141 163 0.96 3 27 0.14 10 6.2 0.1 1 23 169 192 169 192 0.93 4 27 0.1 7.8 6.6 0.3 1 23 202 224 202 224 0.97 5 27 0.00071 0.054 13.4 0.1 1 20 230 249 230 251 0.93 6 27 0.00064 0.049 13.5 3.9 1 23 386 408 386 408 0.94 7 27 0.021 1.6 8.8 0.2 3 23 416 436 414 436 0.95 8 27 3.4e-05 0.0026 17.6 0.5 1 23 441 463 441 463 0.92 9 27 0.00034 0.026 14.4 1.0 2 23 466 487 465 487 0.97 10 27 3.2e-05 0.0025 17.6 0.2 1 23 494 517 494 517 0.93 11 27 0.0066 0.5 10.4 0.4 1 23 541 563 541 563 0.96 12 27 0.0011 0.085 12.8 0.0 1 23 568 591 568 591 0.97 13 27 0.019 1.5 8.9 0.1 2 23 596 617 595 617 0.95 14 27 1.4e-06 0.00011 21.9 1.4 2 23 625 646 624 646 0.96 15 27 0.19 15 5.8 0.1 1 23 650 672 650 672 0.98 16 27 1.3e-06 0.0001 22.0 0.8 1 23 677 699 677 699 0.98 17 27 2.1e-07 1.6e-05 24.5 1.1 1 23 705 727 705 727 0.98 18 27 8.9e-05 0.0068 16.2 0.6 1 23 735 757 735 758 0.95 19 27 0.0029 0.22 11.5 0.1 3 23 767 787 767 787 0.99 20 27 1.1e-05 0.00086 19.1 1.4 1 23 793 815 793 815 0.99 21 27 0.00031 0.024 14.5 1.1 1 23 821 843 821 843 0.95 22 27 0.00049 0.037 13.9 3.0 1 23 848 870 848 870 0.97 23 27 1.2e-05 0.0009 19.0 1.5 1 23 876 898 876 898 0.96 24 27 0.0014 0.1 12.5 0.1 1 23 907 929 907 929 0.97 25 27 0.0029 0.22 11.5 0.9 2 23 939 961 938 961 0.96 26 27 5e-06 0.00038 20.2 3.0 1 23 967 989 967 989 0.96 27 27 0.00074 0.057 13.3 4.0 1 23 995 1017 995 1017 0.99
Sequence Information
- Coding Sequence
- CTGCTGGTGGCCCTGGACGGCCACCTGAAGCAAGAAGCCCTGGGGCGCGGTGGCGCTGATGCTGGCGACGGTGTCGCGCGTGACGGGGCGGGAGTGAGCGACGAGGAAGCGCCCGAGGCGCTCAGCGACCTCGGCGAGGTGGTGCTGCTCCGCGGGGCGGACGTGGACGACGACGAGGTGGACGTGGACGGGGGCAGCCCGCCGCCGCCGCTGAGCGCGGGTCCGCGGCCGCGCTGCGTGCGCCGGGTGCTGGCCACGCCCACCCCGCCGCCCGGGGCCGCGGAGGACGACGTGGACGTGGAGGGGTGCTCGTCGGGCGAGGAGGGCCGGCCGACGCTGCGCTGCCcgatgtgcccggccgcgttctggcggcccgagcaccgcacccggcacctgcagtgccacctgggctcgcggccgcacgcctgcaccggctgctgcgcctccttcaaccgcaacgaccagctggtggcccacctccggctgcaccgcggcgagtggccgtacaagtgcgtgcgctgcggcgaggacttcctgaccaaggagctgatgcgcgaccacgcggcgcgcgcccaccaggactcggcggaggcggcgctgccgttccggtgctcgtcctgcggcgacgccttcctccgcgcgctctccctgcgccggcacgagcgcgcgcacacgggcgagaagccgttcgcgtgcccccagtgcgacaagcgcttcgccaactcgccctccaagcggcggcacGTTCTGGCCGAGATGGCCTCGGCCATCAAGGACGACATGGAGATGAAGACCGACCACAACTCGGGCGTCCCCGTCATCTCCTCCGTAGGCTTCGTCAAGGATGAGCTGGCCGCCGACGTGACGGTCAAGCCGGAGCCCATGGACACCGAGGTGCTGATGGAGAACGGGCTGCCCCTCCCGCGCCCCGAGGAGAACGACGACCAGGTCCACGACGAGGTGTTCGGCGACAACATGGCCCTCagcaacgagcacctcaacgacgacacgaacgacgccgccgacgatgtcctcgccgaggatggacaggaggaggagaaggaaggcgaggaTCAGATTTGGAACTGGCTCTCACACGGTTGGAACCTCGGACCGGAGATAGAAGGGGAGAAAGTCCGCCGGTCCAAGCGCAAGTTCTTCTGCAAGCAGTGCCCGGCCCActtcaggcggccgaaccacctcaagaagcacgaggtgatccactacgccaacaaggcgttcggctgcccgcactgcacggccagcttcgcgtccgaggcgcgcctcagccagcacgtggtggtgcacacgggcgacggcttccgctgcgacaagtgcgacgagacgttctcgtcggcgaccctgctcaaggagcacctgccgacgcactcgtggaagtgcccctactgcacgtccgtgttccagaccctgcacggcctcaagatccacgcccgcacccacaacaaggtgctcaacaccttcctgtgctccgagtgcccggagagcttcaccggcaaggacgagctcaaggcgcacaagcgcgccAGCCACCCGACGGCGCCCGCCCCAGTGCCGCCGCCGCCGCCGCCCGTCCCGGAGGTGAAGGAGCCCGAGATGACCTTCGAGTGCGACTACTGCTTCCGCATCTTCCCGTCCTCGTTCGAGATGCTGCTGCACGCCAAGGAGCACATCACCCGGGACTACCCGTGCGAAGTGTGCCCCGACCAGTTCGACTCGCGCAAGGAGCTCGCCGTCCACATGCAGAAGGCCCACACCAAGGAGATCAAGTGCAACAAGTGCGACCTGACGTTCCCCGCCCAGCCCGAGCTGGACCTGCACTCGGCCACGCACAACGTCGACgacgagcacctccgctgcgagttctgccccaaggtgttcgccaccaactaccacctgctgcgccacatggacagccacgagcagaagtacgagtgcggcagctgccaggccgcgttcctgacgcgcgcccagctcgacatgcacgagaagacgcacacggagggcgcgttccgctgcgacgactgcggccagcgcttccagtccaagccgcagctggcgacgcacatgcgccagcacgacgacctcaagccgttcccctgcgaggagtgcaccatccgcttcaagacggagagccagctgaccaagcacatgcgctcgcacaagcgcacgtccgcctcgggcttcaactgctccgactgcggcgcgcccttcatgaccacctaccagctccaggaccacgtgcgcgcgcaccacgtcaagaaggccaaggcccactggtgcgaccagtgcgccgagtcgttccccaccaaggccctgctggacgtccacgtgcgctcgcacgccgaccaggggctcttccagtgcgagcactgcccgctcaacttcggcaccgactacggcctgcagcagcacatgcgcacccactcggacaagcggcccttcctctgcggctactgcgaggccagcttcaccctcaaggagcacatgatccgccacatgaaggcccacaagaagaagcagtactgctgcgccttctgctcgctcgtcttccccaagagcagccacctggtgcggcacgagcgcatccacacgggcgagcggccgtacgcgtgcgccgcctgcccgctgcgcttccggcagcgcagccacctgcagcggcaccagctgacgcacaccgaggagGCGCAGCCCCGCGCCCACCAGTGCGCCCTCTGCCCCGCCGCCTTCGCCGAGAGCGCGCACCTCGAGCAGCACGCGCGCGCGCACGCGGGAGGAGTCTCGCTGGTCCCGCTCTCCtgctccgagtgcggcctgcacttccccaacttccgcctgatgctggcgcaccggcgcagcgagcaccagggcgggcggccgcacgcgtgcccgcactgcgacgcggccttcaagcggtccgagcacctggcccggcacctgctgcgccacacgggcgagacgccctacacgtgcccgtactgcgagagccgcttccgccgccgggactgcatgatccagcacgtgaagaagcacaccgCCATGGTGGGCTAG
- Protein Sequence
- LLVALDGHLKQEALGRGGADAGDGVARDGAGVSDEEAPEALSDLGEVVLLRGADVDDDEVDVDGGSPPPPLSAGPRPRCVRRVLATPTPPPGAAEDDVDVEGCSSGEEGRPTLRCPMCPAAFWRPEHRTRHLQCHLGSRPHACTGCCASFNRNDQLVAHLRLHRGEWPYKCVRCGEDFLTKELMRDHAARAHQDSAEAALPFRCSSCGDAFLRALSLRRHERAHTGEKPFACPQCDKRFANSPSKRRHVLAEMASAIKDDMEMKTDHNSGVPVISSVGFVKDELAADVTVKPEPMDTEVLMENGLPLPRPEENDDQVHDEVFGDNMALSNEHLNDDTNDAADDVLAEDGQEEEKEGEDQIWNWLSHGWNLGPEIEGEKVRRSKRKFFCKQCPAHFRRPNHLKKHEVIHYANKAFGCPHCTASFASEARLSQHVVVHTGDGFRCDKCDETFSSATLLKEHLPTHSWKCPYCTSVFQTLHGLKIHARTHNKVLNTFLCSECPESFTGKDELKAHKRASHPTAPAPVPPPPPPVPEVKEPEMTFECDYCFRIFPSSFEMLLHAKEHITRDYPCEVCPDQFDSRKELAVHMQKAHTKEIKCNKCDLTFPAQPELDLHSATHNVDDEHLRCEFCPKVFATNYHLLRHMDSHEQKYECGSCQAAFLTRAQLDMHEKTHTEGAFRCDDCGQRFQSKPQLATHMRQHDDLKPFPCEECTIRFKTESQLTKHMRSHKRTSASGFNCSDCGAPFMTTYQLQDHVRAHHVKKAKAHWCDQCAESFPTKALLDVHVRSHADQGLFQCEHCPLNFGTDYGLQQHMRTHSDKRPFLCGYCEASFTLKEHMIRHMKAHKKKQYCCAFCSLVFPKSSHLVRHERIHTGERPYACAACPLRFRQRSHLQRHQLTHTEEAQPRAHQCALCPAAFAESAHLEQHARAHAGGVSLVPLSCSECGLHFPNFRLMLAHRRSEHQGGRPHACPHCDAAFKRSEHLARHLLRHTGETPYTCPYCESRFRRRDCMIQHVKKHTAMVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -