Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 2.2e-05 0.02 14.0 0.0 5 38 79 111 75 114 0.91

2 2 3.2e-11 2.9e-08 32.7 0.0 3 35 154 187 152 193 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	2.2e-05	0.02	14.0	0.0	5	38	79	111	75	114	0.91
2	2	3.2e-11	2.9e-08	32.7	0.0	3	35	154	187	152	193	0.91

Coding Sequence: ATGCCGGCCAAGCTGCTCGAGTCCTCGCACGCGTGGCTGGGCGCGTCCACCTCTTCGCTAGCCGAGGTTGGCTGCCCGAGTGCCGGCGCGGGCGGCGCAGACCCGGGGCCCAGCCAGAGGTCCTCGCGGGGCAAGGGCAGCAACGGCCATGGCAGGGGGGCCCGCGGGGTTACGTCGGTGTGGAAGGCGCTGCAGGTGTCCAAGAGCATGAACTCCAAGTGGACGCAGCAGGACCTGCTGTTCGCCATCGAGCTGGTGCGCCAGGGCATGCCCATCAAGCCCGCCGCCGAGAAGTGCAACATTCCGGTGATGACGCTTTGGCGGCGCACGCGCGCCCTGGGCGTGTTCAGCAGCCGGGCCGCGTCGGGCTACCGGCCGGACCAGGCCGCGCAGGCCGCGCAGGCGGAGCCCCCAGAGGCCCACAATCTGGTGAAGCTGAAGGCGCCCGTGTGGACGCAGGCCCAGCTCAAGGAGGCCATCCAGGCCGTGGTCACTCAGAAGATGCGCTTCACGCAGGCCTCGTCCAAGTACGGCATCCCCAAGGGAACGCTGTACGACAACATCCTGGGCAAGTCCAAGCGCATGATGGTGCTGGACGAGGCGAGCCTCACGTCCGACGAGGAGAACGCCGTGCTTGAGTTCTGTTGCGAGATCTCGGTCTCGCCGTTCAACCGGCGCACCAAAAAGAGTCTGCATTCCATACTGAGCTTTGTTGAGAAGCTGCGTCGGGCGAGAGACCCCGACTTTGAGTTTCAGGGTCTGGCTGGCTTCCGCTGGTGGTGGGCCTTCTGCAAAAAGCACAGCATTGTCTCGCTGTACTTCGACTGCAGAGATTGA
Protein Sequence: MPAKLLESSHAWLGASTSSLAEVGCPSAGAGGADPGPSQRSSRGKGSNGHGRGARGVTSVWKALQVSKSMNSKWTQQDLLFAIELVRQGMPIKPAAEKCNIPVMTLWRRTRALGVFSSRAASGYRPDQAAQAAQAEPPEAHNLVKLKAPVWTQAQLKEAIQAVVTQKMRFTQASSKYGIPKGTLYDNILGKSKRMMVLDEASLTSDEENAVLEFCCEISVSPFNRRTKKSLHSILSFVEKLRRARDPDFEFQGLAGFRWWWAFCKKHSIVSLYFDCRD

Sequence clustering based on sequence similarity using MMseqs2